New AAP Guidance: Exome and genome sequencing recommended as first-line tests. Learn more

In the Know

Unexplained epilepsy doesn’t have to remain unexplained. Even for adults, answers are within reach.

Decades after an individual’s first unexplained seizure, a genetic diagnosis can still provide the clarity that they have been waiting for, and the chance for better outcomes.¹ It’s also more accessible than ever.

September 22, 2025 6 min read

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It’s quickly becoming the standard of care to order genetic testing for pediatric patients with unexplained epilepsy and help families get answers early. However, it’s a relatively recent shift, and thousands of adults with unexplained epilepsy still live with uncertainty of the root cause of their seizures. That’s because many adults with epilepsy received their clinical diagnosis years ago, when genetic testing options were more limited. 

Ten to twenty years ago, the standard pediatric epilepsy work-up would have included clinical testing, including EEG and brain imaging. Some individuals may have been offered genetic testing in the form of a microarray, single-gene testing or a small gene panel, if any genetic testing at all.2

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Answers that can inform treatment

The numbers speak for themselves: 

That’s because therapies, clinical trials, and management strategies for genetic epilepsies have expanded in recent years. 

Even into a patient’s later years, a genetic diagnosis can help guide a more tailored management approach and treatment changes—decreasing seizures and identifying contraindicated medications. This can result in improvements in:

seizure frequency

cognition

language and communication

quality of life1


Many of your adult patients could already be candidates for therapies they’ve never had the chance to try. Just a few examples:

SCNIA gene

For patients with SCN1A variants, a genetic diagnosis often means fewer seizures, fewer side effects, and a chance at a more normal life. More than half of patients with a genetic variant in SCN1A had a decrease in seizure frequency after treatment changes enabled by their genetic diagnosis.5 

CDKL5 gene

For patients with CDKL5 deficiency disorder, options were once limited. Now, a new neuroactive steroid has been developed specifically for patients with CDKL5, which has been shown to decrease seizures.6

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Several gene therapies for epilepsy are entering clinical trials; these investigational treatments may offer an alternative to drug and surgical therapies, and show potential for precise and personalized care.7,8

Even in cases where seizure control isn’t fully possible, knowing the genetic cause of a patient’s epilepsy can still prevent unnecessary or harmful treatments, open doors to supportive therapies and community resources, and provide emotional relief and a sense of closure.

When panel testing isn’t enough

Even if your patient received a test like a panel or chromosomal microarray (CMA) in the past, it may have missed a genetic diagnosis, as these tests are much more limited.

Now we know that epilepsy can be caused by changes in more than 900 genes8—and we expect more to still be discovered.

Today’s exome sequencing can analyze thousands of genes in one test, covering both known and newly discovered epilepsy genes. That’s a big step forward from panel tests, which are limited to looking at just a set number of genes. 

In a recent study, six commercially available epilepsy panels:5

  • Did not include 57% of seizure-related genes
  • Would not have returned a positive result for the majority of patients who received a genetic diagnosis with exome sequencing

Exome sequencing: More likely to provide a genetic diagnosis 

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Diagnostic yield of exome sequencing in patients >18 years3

Exome sequencing finds a genetic variant for 1 in 4 adult patients with epilepsy5—making it more likely to find the root cause than other types of genetic testing.

Recommended as a first-line test for unexplained epilepsy

The National Society of Genetic Counselors (NSGC) recommends exome sequencing as a first-tier test for all individuals with unexplained epilepsy, regardless of age or comorbidities.9 This recommendation is endorsed by the American Epilepsy Society (AES).

More accessible than ever

Exome sequencing is now within reach for most patients, with more insurers recognizing its value. As a neurologist, you can help your adult patients finally get the clarity they’ve missed. 

As the leading genomic testing brand amongst healthcare professionals for exome sequencing, GeneDx is here to help. Our testing aligns with the NSGC recommendation and AES endorsement—and our team is here to help you interpret results and plan next steps with confidence.

Plus, more patients are covered than you may think. Many insurance companies now recognize the importance of exome sequencing for patients with epilepsy, and their coverage policies reflect that understanding. 

If you have adult patients with unexplained epilepsy, it’s not too late to look for answers that could improve their care.

Have questions before getting started? Click here to get in touch with our team. 

References: 1. Clayton LM, Vakrinou A, Balestrini S, Sisodiya SM. Curr Neurol Neurosci Rep. 2025 May 17;25(1):35.  2. Hunter SE, Jalazo E, Felton TR, et al. Epilepsy Genetics: Advancements in the Field and Impact on Clinical Practice. In: Czuczwar SJ, editor. Epilepsy [Internet]. Brisbane (AU): Exon Publications; 2022 Apr 2. Chapter 3. Available at: https://www.ncbi.nlm.nih.gov/books/NBK580613. 3. McKnight D, Bristow SL, Truty RM, et al. Neurol Genet. 2021 Dec 16;8(1):e650. 4. Sheidley BR, Malinowski J, Bergner AL, et al. Epilepsia. 2022 Feb;63(2):375-387. 5. Butler L, et al. Exome-based testing for patients with seizures: Advantages over panel-based testing. Poster presented at American Epilepsy Society Annual Meeting; December 2, 2023; Orlando, FL. 6. Wiedower E, Vadlamudi N, Chen J, et al. J Mol Diagn. 2024 Nov;26(11):701–709. 7. Walker MC. Curr Opin Neurol. 2025 Apr 1;38(2):128-134. 8. Ghosh S, Sinha JK, Ghosh S, et al. Brain Sci. 2023 Sep 11;13(9):1305.  9. Smith L, Malinowski J, Ceuleman S, et al. J Genet Couns. 2023 Apr;32(2):266-280.