XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.



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Tubulointerstitial nephritis

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
ALMS12p13.199.77%gene with protein product606844Abnormal chorioretinal morphology; Abnormality of the dentition; Abnormality of the hand; Acanthosis nigricans; Accelerated skeletal maturation; Alopecia; Asthma; Atherosclerosis; Autosomal recessive inheritance; Blindness; Cataract; Chronic active hepatitis; Chronic otitis media; Cone/cone-rod dystrophy; Congestive heart failure; Constriction of peripheral visual field; Death in early adulthood; Decreased circulating high-density lipoprotein levels; Diabetes insipidus; Dilated cardiomyopathy; Elevated hepatic transaminases; Gingivitis; Global developmental delay; Growth hormone deficiency; Gynecomastia; Hepatic steatosis; Hepatomegaly; Hypergonadotropic hypogonadism; Hyperinsulinemia; Hyperostosis frontalis interna; Hypertension; Hypertriglyceridemia; Hyperuricemia; Hypothyroidism; Insulin resistance; Insulin-resistant diabetes mellitus; Kyphosis; Menstrual irregularities; Multinodular goiter; Nephritis; Nystagmus; Otitis media; Pes planus; Photophobia; Pigmentary retinopathy; Progressive sensorineural hearing impairment; Progressive visual loss; Pulmonary arterial hypertension; Recurrent pneumonia; Recurrent respiratory infections; Renal insufficiency; Respiratory insufficiency; Scoliosis; Short stature; Subcapsular cataract; Truncal obesity; Tubulointerstitial nephritis; Type II diabetes mellitusBardet-Biedl Syndrome ; Obesity
BCS1L2q35100%gene with protein product603647Abnormal pattern of respiration; Abnormality of the abdominal wall; Abnormality of the coagulation cascade; Alopecia; Aminoaciduria; Anhidrosis; Ataxia; Autosomal recessive inheritance; Brittle hair; Cataract; Cerebellar atrophy; Cerebral atrophy; Cholangitis; Cholestasis; Chronic lactic acidosis; Cirrhosis; CNS demyelination; Coarse hair; Death in early adulthood; Decreased liver function; Decreased mitochondrial complex III activity in liver tissue; Decreased transferrin saturation; Depressivity; Dry hair; Dysarthria; Dystonia; EEG abnormality; Elevated hepatic iron concentration; Elevated hepatic transaminases; Emotional lability; Exercise intolerance; Failure to thrive; Feeding difficulties in infancy; Generalized hypotonia; Gliosis; Global developmental delay; Hair shafts flattened at irregular intervals and twisted through 180 degrees about their axes; Hallucinations; Hearing impairment; Hepatic steatosis; Hepatocellular necrosis; Heterogeneous; Hyperreflexia; Hypertrichosis; Hypertrophic cardiomyopathy; Hypoglycemia; Hypogonadism; Increased CSF lactate; Increased serum ferritin; Increased serum iron; Increased serum lactate; Increased serum pyruvate; Infantile onset; Intellectual disability; Intrauterine growth retardation; Lactic acidosis; Metabolic acidosis; Microvesicular hepatic steatosis; Mitochondrial encephalopathy; Mitochondrial inheritance; Muscle weakness; Nystagmus; Ophthalmoplegia; Optic atrophy; Phenotypic variability; Pigmentary retinopathy; Pili torti; Progressive; Ptosis; Ragged-red muscle fibers; Renal Fanconi syndrome; Respiratory failure; Rhabdomyolysis; Rod-cone dystrophy; Seizures; Sensorineural hearing impairment; Spasticity; Strabismus; Tubulointerstitial nephritis; Variable expressivity
CEP8312q2299.59%gene with protein product615847CCDC41Autosomal recessive inheritance; Nephronophthisis; Stage 5 chronic kidney disease; Thickening of the glomerular basement membrane; Tubular atrophy; Tubulointerstitial nephritis
FAN115q13.3100%gene with protein product613534KIAA1018, MTMR15Abdominal pain; Anxiety; Attention deficit hyperactivity disorder; Autosomal recessive inheritance; Colon cancer; Constipation; Death in early adulthood; Death in infancy; Depressivity; Elevated serum creatinine; Fatigue; Gastrointestinal hemorrhage; Glioblastoma multiforme; Glycosuria; Hypertonia; Increased blood urea nitrogen; Increased intracranial pressure; Irritability; Malabsorption; Migraine; Muscular hypotonia; Nausea and vomiting; Neoplasm of the rectum; Nephronophthisis; Progressive; Proteinuria; Seizures; Stage 5 chronic kidney disease; Tubulointerstitial nephritis; Weight lossHeterotaxy
IFT1223q21.3-q22.199.99%gene with protein product606045WDR10Abnormal diaphysis morphology; Abnormal toenail morphology; Abnormality of the abdominal wall; Abnormality of the fingernails; Abnormality of the metaphysis; Anodontia; Anteverted nares; Autosomal recessive inheritance; Bicuspid aortic valve; Brachydactyly; Broad distal phalanges of all fingers; Broad toe; Chronic kidney disease; Clinodactyly; Craniosynostosis; Dolichocephaly; Ectodermal dysplasia; Epicanthus; Everted lower lip vermilion; Fibular hypoplasia; Fine hair; Finger syndactyly; Flattened epiphysis; Frontal bossing; Full cheeks; Hepatic cysts; Hepatic failure; Hepatic fibrosis; Hepatomegaly; High, narrow palate; Hypocalcemia; Hypodontia; Hypoplasia of dental enamel; Hypotelorism; Joint hyperflexibility; Joint laxity; Malformation of the hepatic ductal plate; Microdontia; Myopia; Narrow chest; Nystagmus; Osteoporosis; Pectus excavatum; Prominent occiput; Protuberant abdomen; Radial deviation of finger; Renal magnesium wasting; Retinal dystrophy; Rhizomelia; Sagittal craniosynostosis; Scaphocephaly; Short distal phalanx of finger; Short humerus; Short nail; Short ribs; Short toe; Single transverse palmar crease; Slow-growing hair; Sparse hair; Telecanthus; Thin nail; Tubulointerstitial nephritis; Wide nasal bridge; Widely spaced teethEctodermal Dysplasia ; Heterotaxy ; Short-Rib Thoracic Dysplasia
MUC11q22100%gene with protein productPlease note that a variant in the variable number of tandem repeat region of this gene, similar to what has been reported in association with medullary cystic kidney disease, is not detectable by XomeDxSlice. 158340PUM, MCKD1Adult onset; Anemia; Autosomal dominant inheritance; Cerebral cortical atrophy; Decreased glomerular filtration rate; Elevated serum creatinine; Glomerulosclerosis; Gout; Hypertension; Hypotension; Impaired renal uric acid clearance; Renal cortical atrophy; Renal corticomedullary cysts; Renal hypoplasia; Renal salt wasting; Stage 5 chronic kidney disease; Tubular atrophy; Tubular basement membrane disintegration; Tubulointerstitial fibrosis; Tubulointerstitial nephritis
MUT6p12.399.98%gene with protein product609058Abnormal globus pallidus morphology; Anorexia; Autosomal recessive inheritance; Cardiomyopathy; Coma; Dehydration; Delayed CNS myelination; Dysarthria; Dystonia; Failure to thrive; Feeding difficulties; Generalized hypotonia; Global developmental delay; Growth delay; Hepatomegaly; Hyperammonemia; Hyperglycinemia; Immunodeficiency; Intellectual disability; Lethargy; Leukopenia; Metabolic ketoacidosis; Methylmalonic acidemia; Methylmalonic aciduria; Muscular hypotonia; Nausea and vomiting; Pancreatitis; Respiratory distress; Splenomegaly; Stage 5 chronic kidney disease; Thrombocytopenia; Tubulointerstitial nephritis; Vomiting
TRAF3IP12q37.3100%gene with protein product607380Abnormality of retinal pigmentation; Autosomal recessive inheritance; Global developmental delay; Hypertension; Macular degeneration; Nephronophthisis; Nystagmus; Premature ovarian insufficiency; Progressive visual loss; Retinal dystrophy; Rod-cone dystrophy; Short stature; Stage 5 chronic kidney disease; Strabismus; Tubulointerstitial nephritis; Visual impairmentObesity

The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-SRTDShort-Rib Thoracic Dysplasia
CS-WSWaardenburg Syndrome