XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

ENTER GENES BELOW AND CLICK "ADD GENES TO SLICE"

If cutting and pasting from another document, please be sure to list EITHER one gene symbol per line OR enter a comma-separated list.


OR

SEARCH BY GENE SYMBOL OR PHENOTYPE (HPO TERM)

You may also use this search to review average exome sequencing coverage by entering the gene symbol below.

SELECTED GENES FOR YOUR SLICE

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Phenotypes
Tubular atrophy

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
CEP8312q2299.59%gene with protein product615847CCDC41Autosomal recessive inheritance; Nephronophthisis; Stage 5 chronic kidney disease; Thickening of the glomerular basement membrane; Tubular atrophy; Tubulointerstitial nephritis
CLCN5Xp11.23100%gene with protein product300008NPHL2, NPHL1Aminoaciduria; Bone pain; Bowing of the legs; Bulging epiphyses; Chronic kidney disease; Delayed epiphyseal ossification; Enlargement of the ankles; Enlargement of the wrists; Femoral bowing; Fibular bowing; Focal segmental glomerulosclerosis; Glomerulosclerosis; Glycosuria; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Low-molecular-weight proteinuria; Metaphyseal irregularity; Microscopic hematuria; Nephrocalcinosis; Nephrolithiasis; Osteomalacia; Phenotypic variability; Proximal tubulopathy; Recurrent fractures; Renal insufficiency; Renal phosphate wasting; Rickets; Short stature; Slow progression; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Tubular atrophy; Tubulointerstitial fibrosis; X-linked recessive inheritance
CLCN5Xp11.23100%gene with protein product300008NPHL2, NPHL1Aminoaciduria; Bone pain; Bowing of the legs; Bulging epiphyses; Chronic kidney disease; Delayed epiphyseal ossification; Enlargement of the ankles; Enlargement of the wrists; Femoral bowing; Fibular bowing; Focal segmental glomerulosclerosis; Glomerulosclerosis; Glycosuria; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Low-molecular-weight proteinuria; Metaphyseal irregularity; Microscopic hematuria; Nephrocalcinosis; Nephrolithiasis; Osteomalacia; Phenotypic variability; Proximal tubulopathy; Recurrent fractures; Renal insufficiency; Renal phosphate wasting; Rickets; Short stature; Slow progression; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Tubular atrophy; Tubulointerstitial fibrosis; X-linked recessive inheritance
GLIS216p13.399.99%gene with protein product608539Autosomal recessive inheritance; Nephronophthisis; Stage 5 chronic kidney disease; Tubular atrophy
ITGA317q21.33100%gene with protein product605025MSK18Autosomal recessive inheritance; Decreased glomerular filtration rate; Fine hair; Fragile skin; Gynecomastia; Hypertelorism; Hypoalbuminemia; Macrotia; Microcephaly; Narrow chest; Narrow mouth; Neonatal respiratory distress; Phenotypic variability; Prominent forehead; Proteinuria; Renal insufficiency; Respiratory acidosis; Round face; Sparse and thin eyebrow; Sparse eyelashes; Sparse scalp hair; Tubular atrophyNephrotic Syndrome
MUC11q22100%gene with protein productPlease note that a variant in the variable number of tandem repeat region of this gene, similar to what has been reported in association with medullary cystic kidney disease, is not detectable by XomeDxSlice. 158340PUM, MCKD1Adult onset; Anemia; Autosomal dominant inheritance; Cerebral cortical atrophy; Decreased glomerular filtration rate; Elevated serum creatinine; Glomerulosclerosis; Gout; Hypertension; Hypotension; Impaired renal uric acid clearance; Renal cortical atrophy; Renal corticomedullary cysts; Renal hypoplasia; Renal salt wasting; Stage 5 chronic kidney disease; Tubular atrophy; Tubular basement membrane disintegration; Tubulointerstitial fibrosis; Tubulointerstitial nephritis
MYO1E15q22.299.95%gene with protein product601479Autosomal recessive inheritance; Chronic kidney disease; Edema; Focal segmental glomerulosclerosis; Hematuria; Hypoalbuminemia; Nephrotic syndrome; Progressive; Proteinuria; Tubular atrophyNephrotic Syndrome
NPHP12q1398.95%gene with protein product607100NPH1Abnormal electroretinogram; Abnormality of retinal pigmentation; Anemia; Apnea; Ataxia; Autosomal recessive inheritance; Biparietal narrowing; Cerebellar vermis hypoplasia; Cognitive impairment; Delayed gross motor development; Elongated superior cerebellar peduncle; Feeding difficulties; Gait disturbance; Generalized hypotonia; Global developmental delay; Growth delay; Heterogeneous; Hypertension; Hypogonadism; Hypometric saccades; Hypoplasia of penis; Hypoplasia of the ovary; Hyposthenuria; Intellectual disability; Long face; Low-set, posteriorly rotated ears; Molar tooth sign on MRI; Multicystic kidney dysplasia; Muscular hypotonia; Nephronophthisis; Nephropathy; Nystagmus; Obesity; Oculomotor apraxia; Pigmentary retinopathy; Polydipsia; Polyuria; Postaxial hand polydactyly; Premature ovarian insufficiency; Progressive visual loss; Renal corticomedullary cysts; Renal insufficiency; Retinal dystrophy; Short stature; Stage 5 chronic kidney disease; Tapetoretinal degeneration; Thickened superior cerebellar peduncle; Tubular atrophy; Tubular basement membrane disintegration; Tubulointerstitial fibrosis; Visual impairmentHeterotaxy ; Nephrotic Syndrome
NPHP33q22.199.36%gene with protein product608002Abnormal biliary tract morphology; Abnormal liver parenchyma morphology; Abnormality of retinal pigmentation; Abnormality of the pancreas; Aortic valve stenosis; Asplenia; Atrial septal defect; Autosomal recessive inheritance; Bile duct proliferation; Biliary cirrhosis; Cholestasis; Cirrhosis; Dandy-Walker malformation; Enlarged kidney; Enuresis; Global developmental delay; Hepatic cysts; Hepatic fibrosis; Hepatomegaly; Hypertension; Intestinal malrotation; Multicystic kidney dysplasia; Nephronophthisis; Oligohydramnios; Pancreatic cysts; Pancreatic fibrosis; Patent ductus arteriosus; Polycystic kidney dysplasia; Polydipsia; Polyhydramnios; Polysplenia; Polyuria; Potter facies; Premature ovarian insufficiency; Progressive visual loss; Pulmonary hypoplasia; Renal corticomedullary cysts; Renal dysplasia; Renal insufficiency; Retinal dystrophy; Short stature; Stage 5 chronic kidney disease; Tubular atrophy; Tubulointerstitial fibrosis; Visual impairmentHeterotaxy
NPHP41p36.31100%gene with protein product607215Abnormality of retinal pigmentation; Amblyopia; Anemia; Autosomal recessive inheritance; Global developmental delay; Growth delay; Heterogeneous; Hypertension; Nephronophthisis; Polydipsia; Polyuria; Premature ovarian insufficiency; Progressive visual loss; Renal corticomedullary cysts; Retinal dystrophy; Rod-cone dystrophy; Rotary nystagmus; Severe visual impairment; Short stature; Stage 5 chronic kidney disease; Tubular atrophy; Tubulointerstitial fibrosis; Visual impairment
NPHS119q13.12100%gene with protein product602716Abdominal distention; Abnormality of the renal tubule; Autosomal recessive inheritance; Congenital nephrotic syndrome; Congenital onset; Delayed eruption of permanent teeth; Diffuse mesangial sclerosis; Edema; Elevated amniotic fluid alpha-fetoprotein; Gastroesophageal reflux; Growth delay; Hyperlipidemia; Hypoalbuminemia; Hypoproteinemia; Hypothyroidism; Neonatal respiratory distress; Nephrotic syndrome; Proteinuria; Pyloric stenosis; Rapidly progressive; Recurrent infections; Renal insufficiency; Small for gestational age; Tubular atrophyNephrotic Syndrome
REN1q32.1100%gene with protein product179820Anemia; Anuria; Autosomal dominant inheritance; Autosomal recessive inheritance; Chronic kidney disease; Focal segmental glomerulosclerosis; Hyperechogenic kidneys; Hyperuricemia; Hypotension; Microcephaly; Oligohydramnios; Potter facies; Pulmonary hypoplasia; Renal hypoplasia; Renotubular dysgenesis; Respiratory insufficiency; Tubular atrophy; Tubulointerstitial fibrosis; Widely patent fontanelles and suturesCongenital Kidney and Urinary Tract (CKUT) Anomalies
TMEM678q22.199.95%gene with protein product609884MKS3Abnormal chorioretinal morphology; Anemia; Anteverted nares; Aplasia/Hypoplasia of the cerebellum; Aplasia/Hypoplasia of the iris; Apnea; Ataxia; Autosomal recessive inheritance; Bile duct proliferation; Biparietal narrowing; Blindness; Breathing dysregulation; Cataract; Cerebellar vermis hypoplasia; Chorioretinal coloboma; Cirrhosis; Cleft palate; Coloboma; Congenital hepatic fibrosis; Cryptorchidism; Depressed nasal ridge; Elevated hepatic transaminases; Elongated superior cerebellar peduncle; Encephalocele; Enlarged fossa interpeduncularis; Episodic tachypnea; Feeding difficulties in infancy; Full cheeks; Gait disturbance; Generalized hypotonia; Global developmental delay; Growth delay; Hepatic fibrosis; Hepatomegaly; Heterogeneous; Hyperreflexia; Hypertelorism; Infantile onset; Intellectual disability; Intellectual disability, moderate; Intrahepatic biliary atresia; Iris coloboma; Lobar holoprosencephaly; Long face; Low-set, posteriorly rotated ears; Microcephaly; Microcornea; Micrognathia; Microphthalmia; Molar tooth sign on MRI; Multicystic kidney dysplasia; Multiple small medullary renal cysts; Muscular hypotonia; Nephronophthisis; Nephropathy; Nystagmus; Occipital encephalocele; Oculomotor apraxia; Oligohydramnios; Optic atrophy; Optic nerve coloboma; Polydactyly; Polydipsia; Polyuria; Portal hypertension; Postaxial foot polydactyly; Postaxial hand polydactyly; Ptosis; Renal corticomedullary cysts; Renal insufficiency; Retinal degeneration; Round face; Sclerocornea; Sloping forehead; Spasticity; Splenomegaly; Stage 5 chronic kidney disease; Talipes; Thickened superior cerebellar peduncle; Tubular atrophy; Tubular basement membrane disintegration; Visual impairment; Wide mouthBardet-Biedl Syndrome ; Heterotaxy
UMOD16p12.3100%gene with protein product191845Abnormality of the renal tubule; Autosomal dominant inheritance; Gout; Hyperuricemia; Juvenile onset; Multiple glomerular cysts; Multiple small medullary renal cysts; Nephropathy; Progressive; Renal insufficiency; Tubular atrophyCongenital Kidney and Urinary Tract (CKUT) Anomalies; Fanconi Anemia
VPS33A12q24.31100%gene with protein product610034Abnormality of the foot; Acetabular dysplasia; Anemia; Autosomal recessive inheritance; Coarse facial features; Coarse hair; Dysostosis multiplex; Epicanthus; Flared iliac wings; Flexion contracture; Focal segmental glomerulosclerosis; Global developmental delay; Hepatomegaly; Hirsutism; Hypertrophic cardiomyopathy; Infantile onset; J-shaped sella turcica; Long eyelashes; Macroglossia; Macrovesicular hepatic steatosis; Optic atrophy; Patent ductus arteriosus; Pectus carinatum; Pectus excavatum; Prominent forehead; Proteinuria; Recurrent respiratory infections; Respiratory distress; Short neck; Splenomegaly; Synophrys; Telecanthus; Thick vermilion border; Thrombocytopenia; Tubular atrophy; Wide nasal bridge; Wide nose
XPNPEP322q13.2100%gene with protein product613553Autosomal recessive inheritance; Kinetic tremor; Nephronophthisis; Renal corticomedullary cysts; Stage 5 chronic kidney disease; Tubular atrophy; Tubular basement membrane disintegration


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome