XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

ENTER GENES BELOW AND CLICK "ADD GENES TO SLICE"

If cutting and pasting from another document, please be sure to list EITHER one gene symbol per line OR enter a comma-separated list.


OR

SEARCH BY GENE SYMBOL OR PHENOTYPE (HPO TERM)

You may also use this search to review average exome sequencing coverage by entering the gene symbol below.

SELECTED GENES FOR YOUR SLICE

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Phenotypes
Retinal coloboma

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
B3GLCT13q12.399.62%gene with protein productFormer name = B3GALTL610308B3GALTLAbnormal cardiac septum morphology; Abnormality of the pulmonary artery; Agenesis of corpus callosum; Agenesis of maxillary lateral incisor; Anterior chamber synechiae; Atrial septal defect; Autosomal recessive inheritance; Biliary tract abnormality; Bilobate gallbladder; Birth length less than 3rd percentile; Brachycephaly; Brachydactyly; Broad neck; Cataract; Cerebral atrophy; Cleft palate; Cleft upper lip; Clinodactyly of the 5th finger; Clitoral hypoplasia; Conical incisor; Corneal opacity; Craniosynostosis; Cryptorchidism; Decreased body weight; Decreased fetal movement; Diastasis recti; Disproportionate short-limb short stature; Facial hypertrichosis; Feeding difficulties in infancy; Frontal bossing; Glaucoma; Global developmental delay; Hemivertebrae; Hydrocephalus; Hydronephrosis; Hypertelorism; Hypoplasia of the uterus; Hypoplasia of the vagina; Hypoplastic labia majora; Hypospadias; Intellectual disability; Intrauterine growth retardation; Iris coloboma; Joint laxity; Limited elbow movement; Long philtrum; Macrocephaly; Microcephaly; Microcornea; Micrognathia; Micromelia; Microtia, second degree; Myopia; Nystagmus; Pectus excavatum; Pes cavus; Peters anomaly; Polyhydramnios; Postnatal growth retardation; Preauricular pit; Preauricular skin tag; Prominent forehead; Protruding ear; Proximal placement of thumb; Ptosis; Pulmonic stenosis; Retinal coloboma; Rhizomelia; Round face; Scoliosis; Seizures; Short columella; Short foot; Short lingual frenulum; Short metacarpal; Short metatarsal; Short palm; Short palpebral fissure; Short toe; Single transverse palmar crease; Square pelvis bone; Stenosis of the external auditory canal; Syndactyly; Thin upper lip vermilion; Toe syndactyly; Umbilical hernia; Upslanted palpebral fissure; Ureteral duplication; Ventricular septal defect; Ventriculomegaly; Webbed neck; Wide anterior fontanel; Wide intermamillary distanceDisorders of Sex Development
CEP29012q21.3298.28%gene with protein product610142Abnormal chorioretinal morphology; Abnormal electroretinogram; Abnormality of neuronal migration; Abnormality of retinal pigmentation; Abnormality of the nervous system; Abnormality of the optic disc; Agenesis of cerebellar vermis; Aplasia/Hypoplasia of the cerebellar vermis; Aplasia/Hypoplasia of the iris; Apnea; Ataxia; Atrial septal defect; Autistic behavior; Autosomal recessive inheritance; Bile duct proliferation; Biparietal narrowing; Blindness; Cataract; Central apnea; Cerebellar vermis hypoplasia; Chorioretinal coloboma; Cleft palate; Congenital blindness; Congenital hepatic fibrosis; Cryptorchidism; Dandy-Walker malformation; Depressed nasal ridge; Encephalocele; Episodic tachypnea; Full cheeks; Generalized hypotonia; Global developmental delay; Hemiplegia/hemiparesis; Hypertelorism; Hypertension; Hypogonadism; Hypoplasia of penis; Hypoplasia of the corpus callosum; Hypoplasia of the ovary; Hyposmia; Impaired renal concentrating ability; Intellectual disability; Intrauterine growth retardation; Iris coloboma; Keratoconus; Lobar holoprosencephaly; Long face; Low-set, posteriorly rotated ears; Microcephaly; Microcornea; Micrognathia; Microphthalmia; Molar tooth sign on MRI; Multicystic kidney dysplasia; Muscular hypotonia; Neonatal breathing dysregulation; Nephronophthisis; Nephropathy; Nystagmus; Obesity; Oculomotor apraxia; Oligohydramnios; Optic atrophy; Pigmentary retinopathy; Postaxial foot polydactyly; Postaxial hand polydactyly; Premature ovarian insufficiency; Progressive visual loss; Ptosis; Reduced visual acuity; Renal cortical cysts; Renal cyst; Retinal coloboma; Retinal dystrophy; Rod-cone dystrophy; Sclerocornea; Seizures; Severe visual impairment; Short stature; Sloping forehead; Stage 5 chronic kidney disease; Tachypnea; Talipes; Tapetoretinal degeneration; Thickened superior cerebellar peduncle; Ventricular septal defect; Visual impairmentBardet-Biedl Syndrome ; Heterotaxy ; Obesity
KIAA058614q23.195.7%gene with protein product610178Abnormality of eye movement; Abnormality of the pinna; Anencephaly; Aplastic clavicles; Apnea; Ataxia; Atrial septal defect; Autosomal recessive inheritance; Biparietal narrowing; Cerebellar vermis hypoplasia; Cleft palate; Congenital diaphragmatic hernia; Depressed nasal bridge; Episodic tachypnea; Feeding difficulties in infancy; Gait disturbance; Generalized hypotonia; Global developmental delay; Hydrocephalus; Hyporeflexia; Intellectual disability; Long face; Low-set ears; Micromelia; Micropenis; Molar tooth sign on MRI; Muscular hypotonia; Narrow chest; Nystagmus; Oculomotor apraxia; Polyhydramnios; Polymicrogyria; Postaxial polydactyly; Preaxial polydactyly; Pulmonary hypoplasia; Retinal coloboma; Short neck; Short ribs; TachypneaShort-Rib Thoracic Dysplasia
PAX210q24.31100%gene with protein product167409Abnormality of the foot; Arnold-Chiari type I malformation; Autosomal dominant inheritance; Autosomal recessive inheritance; Bicornuate uterus; Chorioretinal atrophy; Congenital onset; Focal segmental glomerulosclerosis; Gliosis; Hyperextensible skin; Hypertelorism; Hypertension; Incomplete penetrance; Infantile onset; Intellectual disability; Joint laxity; Low-set ears; Microphthalmia; Morning glory anomaly; Multicystic kidney dysplasia; Myopia; Nephrotic syndrome; Oligohydramnios; Optic nerve coloboma; Optic nerve dysplasia; Orbital cyst; Phenotypic variability; Potter facies; Primary amenorrhea; Proteinuria; Pulmonary hypoplasia; Renal agenesis; Renal dysplasia; Renal hypoplasia; Renal insufficiency; Retinal coloboma; Retrognathia; Seizures; Sensorineural hearing impairment; Soft skin; Stage 5 chronic kidney disease; Talipes equinovarus; Vaginal atresia; Variable expressivity; Vesicoureteral reflux; Visual impairmentCongenital Kidney and Urinary Tract (CKUT) Anomalies; Nephrotic Syndrome
PIGL17p11.2100%gene with protein product605947Abnormal dermatoglyphics; Abnormality of epiphysis morphology; Abnormality of the outer ear; Acute lymphoblastic leukemia; Aplasia/Hypoplasia of the nipples; Aplasia/Hypoplasia of the phalanges of the hand; Aplasia/Hypoplasia of the phalanges of the toes; Aplastic clavicles; Autosomal recessive inheritance; Brachycephaly; Broad-based gait; Cerebral atrophy; Cleft palate; Clinodactyly of the 5th finger; Conductive hearing impairment; Corneal opacity; Depressed nasal bridge; Depressed nasal ridge; Duplicated collecting system; Epicanthus; Erythema; Fine hair; Frontal bossing; Generalized hypotonia; Hearing impairment; Hydronephrosis; Hypertelorism; Hypodontia; Hypoplastic nipples; Ichthyosis; Increased number of teeth; Intellectual disability; Joint contracture of the hand; Large for gestational age; Large hands; Long foot; Low-set nipples; Microdontia; Overfolded helix; Palmoplantar hyperkeratosis; Peripheral pulmonary artery stenosis; Prominent forehead; Ptosis; Pulmonary valve atresia; Retinal coloboma; Seizures; Short foot; Short palm; Short philtrum; Sparse hair; Strabismus; Tall stature; Tetralogy of Fallot; Thick lower lip vermilion; Thick vermilion border; Transposition of the great arteries; Upslanted palpebral fissure; Ureteropelvic junction obstruction; Ventricular septal defect; Violent behavior; Webbed neck; Wide mouth; Wide nasal bridge; Widely spaced teethEctodermal Dysplasia ; Palmoplantar keratoderma plus congenital ichthyosis
PIGL17p11.2100%gene with protein product605947Abnormal dermatoglyphics; Abnormality of epiphysis morphology; Abnormality of the outer ear; Acute lymphoblastic leukemia; Aplasia/Hypoplasia of the nipples; Aplasia/Hypoplasia of the phalanges of the hand; Aplasia/Hypoplasia of the phalanges of the toes; Aplastic clavicles; Autosomal recessive inheritance; Brachycephaly; Broad-based gait; Cerebral atrophy; Cleft palate; Clinodactyly of the 5th finger; Conductive hearing impairment; Corneal opacity; Depressed nasal bridge; Depressed nasal ridge; Duplicated collecting system; Epicanthus; Erythema; Fine hair; Frontal bossing; Generalized hypotonia; Hearing impairment; Hydronephrosis; Hypertelorism; Hypodontia; Hypoplastic nipples; Ichthyosis; Increased number of teeth; Intellectual disability; Joint contracture of the hand; Large for gestational age; Large hands; Long foot; Low-set nipples; Microdontia; Overfolded helix; Palmoplantar hyperkeratosis; Peripheral pulmonary artery stenosis; Prominent forehead; Ptosis; Pulmonary valve atresia; Retinal coloboma; Seizures; Short foot; Short palm; Short philtrum; Sparse hair; Strabismus; Tall stature; Tetralogy of Fallot; Thick lower lip vermilion; Thick vermilion border; Transposition of the great arteries; Upslanted palpebral fissure; Ureteropelvic junction obstruction; Ventricular septal defect; Violent behavior; Webbed neck; Wide mouth; Wide nasal bridge; Widely spaced teethEctodermal Dysplasia ; Palmoplantar keratoderma plus congenital ichthyosis
SALL420q13.2100%gene with protein product607343Abnormal dermatoglyphics; Abnormality of the nasopharynx; Absent radius; Absent thumb; Aganglionic megacolon; Anal atresia; Anal stenosis; Aplasia of metacarpal bones; Atrial septal defect; Autosomal dominant inheritance; Bladder diverticulum; Broad hallux phalanx; Carpal bone hypoplasia; Carpal synostosis; Cataract; Choanal atresia; Choanal stenosis; Conductive hearing impairment; Congenital strabismus; Crossed fused renal ectopia; Duane anomaly; Epicanthus; External ophthalmoplegia; Facial asymmetry; Facial palsy; Fused cervical vertebrae; Hearing impairment; Horseshoe kidney; Hydronephrosis; Hypertelorism; Hypoplasia of deltoid muscle; Hypoplasia of the radius; Hypoplasia of the ulna; Impaired convergence; Impaired ocular abduction; Impaired ocular adduction; Intestinal malrotation; Iris coloboma; Joint stiffness; Leukocytosis; Limited elbow movement; Limited interphalangeal movement; Limited wrist movement; Microphthalmia; Optic disc hypoplasia; Optic nerve coloboma; Palpebral fissure narrowing on adduction; Pectoralis hypoplasia; Pectoralis major hypoplasia; Pes planus; Phenotypic variability; Preaxial hand polydactyly; Preaxial polydactyly; Radial club hand; Radial deviation of the hand; Radioulnar synostosis; Rectovaginal fistula; Renal agenesis; Renal hypoplasia; Renal hypoplasia/aplasia; Renal malrotation; Retinal coloboma; Sandal gap; Scoliosis; Sensorineural hearing impairment; Severe short stature; Short 1st metacarpal; Short distal phalanx of the thumb; Short hallux; Short humerus; Short palpebral fissure; Short thumb; Small thenar eminence; Spina bifida occulta; Strabismus; Syndactyly; Synostosis of carpal bones; Thrombocytopenia; Triphalangeal thumb; Upper limb muscle hypoplasia; Ventricular septal defect; Vesicoureteral reflux; Visual impairmentVACTERL Association
TFAP2A6p24.399.95%gene with protein product107580TFAP2, AP2TFAbnormality of the dentition; Abnormality of the pinna; Agenesis of cerebellar vermis; Anophthalmia; Aplasia cutis congenita; Atypical scarring of skin; Autosomal dominant inheritance; Branchial anomaly; Broad nasal tip; Cataract; Cleft palate; Cleft upper lip; Clinodactyly of the 5th finger; Conductive hearing impairment; Cryptorchidism; Deep philtrum; Depressed nasal bridge; Dermal atrophy; Dolichocephaly; Duplication of internal organs; Ectopic thymus tissue; Elbow flexion contracture; Everted lower lip vermilion; Fingernail dysplasia; Fusion of middle ear ossicles; Gastroesophageal reflux; Hamartoma; Hemangioma; High palate; Hyperlordosis; Hypertelorism; Hypoplastic fingernail; Hypoplastic superior helix; Hypospadias; Intellectual disability, mild; Intrauterine growth retardation; Iris coloboma; Kyphosis; Low posterior hairline; Low-set ears; Low-set, posteriorly rotated ears; Lower lip pit; Malar flattening; Malrotation of colon; Microcephaly; Microdontia; Micrognathia; Microphthalmia; Microtia; Myopia; Nasal speech; Nasolacrimal duct obstruction; Neurological speech impairment; Non-midline cleft lip; Nystagmus; Overfolded helix; Postauricular pit; Posteriorly rotated ears; Preauricular pit; Preaxial hand polydactyly; Premature graying of hair; Proximal placement of thumb; Ptosis; Pyloric stenosis; Reduced number of teeth; Renal agenesis; Renal cyst; Retinal coloboma; Seizures; Sensorineural hearing impairment; Short nasal septum; Short neck; Short stature; Short thumb; Single transverse palmar crease; Small forehead; Strabismus; Supernumerary nipple; Supraauricular pit; Telecanthus; Upslanted palpebral fissure; White forelock; Wide intermamillary distance; Wide nasal bridge


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome