XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

ENTER GENES BELOW AND CLICK "ADD GENES TO SLICE"

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SEARCH BY GENE SYMBOL OR PHENOTYPE (HPO TERM)

You may also use this search to review average exome sequencing coverage by entering the gene symbol below.

SELECTED GENES FOR YOUR SLICE

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Phenotypes
Optic disc hypoplasia

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
CABP411q13.2100%gene with protein product608965Abnormality of macular pigmentation; Autosomal recessive inheritance; Congenital stationary night blindness; Electronegative electroretinogram; High myopia; Nyctalopia; Nystagmus; Optic disc hypoplasia; Photophobia; Reduced visual acuity; Visual impairment
CACNA1FXp11.2399.91%gene with protein product300110CSNB2, AIEDAbnormal electroretinogram; Abnormal light- and dark-adapted electroretinogram; Abnormality of color vision; Abnormality of macular pigmentation; Abnormality of metabolism/homeostasis; Abnormality of retinal pigmentation; Albinism; Astigmatism; Central scotoma; Cone/cone-rod dystrophy; Congenital stationary night blindness; Difficulty adjusting from light to dark; Heterogeneous; High myopia; Hypopigmentation of the fundus; Hypoplasia of the fovea; Myopia; Nyctalopia; Nystagmus; Optic disc hypoplasia; Photophobia; Reduced visual acuity; Severe visual impairment; Visual impairment; X-linked inheritance; X-linked recessive inheritance
CACNA2D412p13.33100%gene with protein product608171Abnormality of color vision; Abnormality of macular pigmentation; Abnormality of retinal pigmentation; Autosomal recessive inheritance; Cone/cone-rod dystrophy; Constriction of peripheral visual field; Electronegative electroretinogram; High myopia; Nyctalopia; Optic disc hypoplasia; Photophobia; Reduced visual acuity; Retinal pigment epithelial mottling; Visual impairment
GDF312p13.31100%gene with protein product606522Abnormal vertebral segmentation and fusion; Abnormality of the ribs; Abnormality of the shoulder; Autosomal dominant inheritance; Bilateral microphthalmos; Cervical C2/C3 vertebral fusion; Cervical C3/C4 vertebral fusion; Cervical C5/C6 vertebrae fusion; Chorioretinal coloboma; Coloboma; Congenital muscular torticollis; Digenic inheritance; Facial asymmetry; Hearing impairment; Hypoplasia of the fovea; Iris coloboma; Low posterior hairline; Microphthalmia; Nystagmus; Optic disc hypoplasia; Scoliosis; Short neck; Sprengel anomaly; Thoracic scoliosis; Visual impairment; Webbed neck
GDF68q22.1100%gene with protein product601147SGM1Abnormal electroretinogram; Abnormal vertebral segmentation and fusion; Abnormality of neuronal migration; Abnormality of retinal pigmentation; Abnormality of the optic disc; Abnormality of the ribs; Abnormality of the shoulder; Absent testis; Aplasia/Hypoplasia of the cerebellar vermis; Autosomal dominant inheritance; Autosomal recessive inheritance; Bilateral microphthalmos; Cataract; Cervical C2/C3 vertebral fusion; Cervicomedullary schisis; Coloboma; Congenital muscular torticollis; Digenic inheritance; Encephalocele; Facial asymmetry; Hearing impairment; Hemiplegia/hemiparesis; Heterogeneous; Hypoplasia of the fovea; Keratoconus; Limited neck range of motion; Low posterior hairline; Microphthalmia; Muscular hypotonia; Nystagmus; Optic disc hypoplasia; Scoliosis; Seizures; Severe visual impairment; Short neck; Sprengel anomaly; Variable expressivity; Visual impairment; Webbed neck
GNAT13p21.31100%gene with protein product139330Abnormality of macular pigmentation; Autosomal dominant inheritance; Autosomal recessive inheritance; Congenital stationary night blindness; High myopia; Nyctalopia; Optic disc hypoplasia; Reduced visual acuity
GNB312p13.31100%gene with protein productXomeDxSlice is not appropriate for pharmacogenomic analysis of this gene. 139130Abnormality of macular pigmentation; Autosomal recessive inheritance; High myopia; Nyctalopia; Optic disc hypoplasia; Photophobia; Reduced visual acuity
GPR17917q12100%gene with protein product614515GPR158L1Abnormality of macular pigmentation; Autosomal recessive inheritance; Congenital stationary night blindness; High myopia; Myopia; Nyctalopia; Nystagmus; Optic disc hypoplasia; Reduced visual acuity; Visual impairment; X-linked recessive inheritance
GRK113q3485.64%gene with protein product180381RHOKAbnormality of macular pigmentation; Autosomal recessive inheritance; Congenital stationary night blindness; High myopia; Nyctalopia; Optic disc hypoplasia; Reduced visual acuity
GRM65q35.399.96%gene with protein product604096Abnormality of macular pigmentation; Autosomal recessive inheritance; Congenital stationary night blindness; Hemeralopia; High myopia; Myopia; Nyctalopia; Optic disc hypoplasia; Reduced visual acuity
HESX13p14.399.93%gene with protein product601802Abdominal distention; Abnormal prolactin level; Abnormality of secondary sexual hair; Abnormality of the hypothalamus-pituitary axis; Abnormality of the voice; Absent septum pellucidum; Agenesis of corpus callosum; Amenorrhea; Anosmia; Anterior hypopituitarism; Anterior pituitary agenesis; Anterior pituitary hypoplasia; Aplasia/Hypoplasia of the breasts; Autosomal dominant inheritance; Autosomal recessive inheritance; Breast hypoplasia; Central hypothyroidism; Cleft palate; Coarse facial features; Constipation; Cryptorchidism; Decreased circulating ACTH level; Decreased fertility; Decreased testicular size; Delayed puberty; Depressed nasal ridge; Diabetes insipidus; Ectopic posterior pituitary; Erectile abnormalities; Failure to thrive; Fatigue; Feeding difficulties; Global developmental delay; Growth hormone deficiency; Hemiplegia/hemiparesis; Hypoglycemia; Hypogonadotrophic hypogonadism; Hypoplasia of penis; Hyposmia; Hypotension; Hypothalamic gonadotropin-releasing hormone deficiency; Hypothyroidism; Infertility; Intellectual disability; Jaundice; Large fontanelles; Micropenis; Muscular hypotonia; Nystagmus; Optic disc hypoplasia; Optic nerve hypoplasia; Oral cleft; Osteopenia; Phenotypic variability; Pituitary hypothyroidism; Polydactyly; Reduced bone mineral density; Seizures; Septo-optic dysplasia; Short finger; Short stature; Sleep disturbance; Strabismus; Umbilical hernia; Visual impairment
LRIT34q25100%gene with protein product615004Abnormality of macular pigmentation; Autosomal recessive inheritance; Congenital stationary night blindness; High myopia; Myopia; Nyctalopia; Optic disc hypoplasia; Reduced visual acuity
NYXXp11.4100%gene with protein product300278CSNB1, CSNB4Abnormality of macular pigmentation; Congenital stationary night blindness; Hemeralopia; High myopia; Nyctalopia; Optic disc hypoplasia; Reduced visual acuity; X-linked recessive inheritance
PAX611p1399.98%gene with protein product607108AN2Abnormal best corrected visual acuity test; Abnormality of movement; Abnormality of retinal pigmentation; Abnormality of the optic disc; Abnormality of the vagina; Abnormality of vision; Amblyopia; Aniridia; Anterior synechiae of the anterior chamber; Aplasia/Hypoplasia of the iris; Aplasia/Hypoplasia of the macula; Ataxia; Autosomal dominant inheritance; Autosomal recessive inheritance; Cataract; Central opacification of the cornea; Cerebellar hypoplasia; Chorioretinal coloboma; Congenital glaucoma; Congenital nystagmus; Contiguous gene syndrome; Corneal opacity; Cryptorchidism; Displacement of the external urethral meatus; EEG abnormality; Everted lower lip vermilion; Generalized hyperpigmentation; Glaucoma; Global developmental delay; Hearing abnormality; Hypoplasia of the corpus callosum; Hypoplasia of the fovea; Hypoplasia of the iris; Hypospadias; Intellectual disability; Keratitis; Mask-like facies; Microcephaly; Micrognathia; Motor delay; Muscular hypotonia; Nephroblastoma; Nystagmus; Opacification of the corneal stroma; Optic atrophy; Optic disc hypoplasia; Optic nerve aplasia; Optic nerve coloboma; Optic nerve hypoplasia; Peripheral vitreous opacities; Peters anomaly; Postural tremor; Presenile cataracts; Pseudopapilledema; Ptosis; Reduced visual acuity; Retinal detachment; Scanning speech; Short stature; Slurred speech; Somatic mutation; Strabismus; Streak ovary; Subcapsular cataract; Thinning of Descemet membrane; Visual impairment; Visual loss
PDE6B4p16.399.86%gene with protein product180072PDEBAbnormal electroretinogram; Abnormal light- and dark-adapted electroretinogram; Abnormality of macular pigmentation; Abnormality of retinal pigmentation; Abnormality of the retinal vasculature; Abnormality of the testis; Anteverted nares; Atypical scarring of skin; Autosomal dominant inheritance; Autosomal recessive inheritance; Blindness; Cataract; Conductive hearing impairment; Congenital stationary night blindness; Glaucoma; High myopia; Hyperinsulinemia; Hypogonadism; Hypoplasia of penis; Intellectual disability; Keratoconus; Nyctalopia; Nystagmus; Obesity; Ophthalmoplegia; Optic atrophy; Optic disc hypoplasia; Photophobia; Progressive night blindness; Reduced visual acuity; Rod-cone dystrophy; Sensorineural hearing impairment; Wide nasal bridge
RHO3q22.1100%gene with protein product180380RP4Abnormal electroretinogram; Abnormality of macular pigmentation; Abnormality of retinal pigmentation; Abnormality of the retinal vasculature; Abnormality of the testis; Anteverted nares; Atypical scarring of skin; Autosomal dominant inheritance; Autosomal recessive inheritance; Blindness; Bone spicule pigmentation of the retina; Cataract; Conductive hearing impairment; Congenital stationary night blindness; Decreased light- and dark-adapted electroretinogram amplitude; Fundus albipunctatus; Glaucoma; High myopia; Hyperinsulinemia; Hypogonadism; Hypoplasia of penis; Intellectual disability; Keratoconus; Nyctalopia; Nystagmus; Obesity; Ophthalmoplegia; Optic atrophy; Optic disc hypoplasia; Photophobia; Pigmentary retinopathy; Progressive night blindness; Reduced visual acuity; Retinal flecks; Rod-cone dystrophy; Sensorineural hearing impairment; Visual field defect; Wide nasal bridge
SAG2q37.199.98%gene with protein product181031Abnormal electroretinogram; Abnormality of macular pigmentation; Abnormality of retinal pigmentation; Abnormality of the retinal vasculature; Abnormality of the testis; Anteverted nares; Atypical scarring of skin; Autosomal recessive inheritance; Blindness; Cataract; Chorioretinal atrophy; Conductive hearing impairment; Congenital stationary night blindness; Decreased light- and dark-adapted electroretinogram amplitude; Glaucoma; Hemeralopia; High myopia; Hyperinsulinemia; Hypogonadism; Hypoplasia of penis; Intellectual disability; Keratoconus; Nyctalopia; Nystagmus; Obesity; Ophthalmoplegia; Optic atrophy; Optic disc hypoplasia; Photophobia; Pigmentary retinopathy; Progressive night blindness; Reduced visual acuity; Rod-cone dystrophy; Sensorineural hearing impairment; Visual impairment; Wide nasal bridge
SALL420q13.2100%gene with protein product607343Abnormal dermatoglyphics; Abnormality of the nasopharynx; Absent radius; Absent thumb; Aganglionic megacolon; Anal atresia; Anal stenosis; Aplasia of metacarpal bones; Atrial septal defect; Autosomal dominant inheritance; Bladder diverticulum; Broad hallux phalanx; Carpal bone hypoplasia; Carpal synostosis; Cataract; Choanal atresia; Choanal stenosis; Conductive hearing impairment; Congenital strabismus; Crossed fused renal ectopia; Duane anomaly; Epicanthus; External ophthalmoplegia; Facial asymmetry; Facial palsy; Fused cervical vertebrae; Hearing impairment; Horseshoe kidney; Hydronephrosis; Hypertelorism; Hypoplasia of deltoid muscle; Hypoplasia of the radius; Hypoplasia of the ulna; Impaired convergence; Impaired ocular abduction; Impaired ocular adduction; Intestinal malrotation; Iris coloboma; Joint stiffness; Leukocytosis; Limited elbow movement; Limited interphalangeal movement; Limited wrist movement; Microphthalmia; Optic disc hypoplasia; Optic nerve coloboma; Palpebral fissure narrowing on adduction; Pectoralis hypoplasia; Pectoralis major hypoplasia; Pes planus; Phenotypic variability; Preaxial hand polydactyly; Preaxial polydactyly; Radial club hand; Radial deviation of the hand; Radioulnar synostosis; Rectovaginal fistula; Renal agenesis; Renal hypoplasia; Renal hypoplasia/aplasia; Renal malrotation; Retinal coloboma; Sandal gap; Scoliosis; Sensorineural hearing impairment; Severe short stature; Short 1st metacarpal; Short distal phalanx of the thumb; Short hallux; Short humerus; Short palpebral fissure; Short thumb; Small thenar eminence; Spina bifida occulta; Strabismus; Syndactyly; Synostosis of carpal bones; Thrombocytopenia; Triphalangeal thumb; Upper limb muscle hypoplasia; Ventricular septal defect; Vesicoureteral reflux; Visual impairmentVACTERL Association
SALL420q13.2100%gene with protein product607343Abnormal dermatoglyphics; Abnormality of the nasopharynx; Absent radius; Absent thumb; Aganglionic megacolon; Anal atresia; Anal stenosis; Aplasia of metacarpal bones; Atrial septal defect; Autosomal dominant inheritance; Bladder diverticulum; Broad hallux phalanx; Carpal bone hypoplasia; Carpal synostosis; Cataract; Choanal atresia; Choanal stenosis; Conductive hearing impairment; Congenital strabismus; Crossed fused renal ectopia; Duane anomaly; Epicanthus; External ophthalmoplegia; Facial asymmetry; Facial palsy; Fused cervical vertebrae; Hearing impairment; Horseshoe kidney; Hydronephrosis; Hypertelorism; Hypoplasia of deltoid muscle; Hypoplasia of the radius; Hypoplasia of the ulna; Impaired convergence; Impaired ocular abduction; Impaired ocular adduction; Intestinal malrotation; Iris coloboma; Joint stiffness; Leukocytosis; Limited elbow movement; Limited interphalangeal movement; Limited wrist movement; Microphthalmia; Optic disc hypoplasia; Optic nerve coloboma; Palpebral fissure narrowing on adduction; Pectoralis hypoplasia; Pectoralis major hypoplasia; Pes planus; Phenotypic variability; Preaxial hand polydactyly; Preaxial polydactyly; Radial club hand; Radial deviation of the hand; Radioulnar synostosis; Rectovaginal fistula; Renal agenesis; Renal hypoplasia; Renal hypoplasia/aplasia; Renal malrotation; Retinal coloboma; Sandal gap; Scoliosis; Sensorineural hearing impairment; Severe short stature; Short 1st metacarpal; Short distal phalanx of the thumb; Short hallux; Short humerus; Short palpebral fissure; Short thumb; Small thenar eminence; Spina bifida occulta; Strabismus; Syndactyly; Synostosis of carpal bones; Thrombocytopenia; Triphalangeal thumb; Upper limb muscle hypoplasia; Ventricular septal defect; Vesicoureteral reflux; Visual impairmentVACTERL Association
SLC24A115q22.31100%gene with protein product603617Abnormality of macular pigmentation; Autosomal recessive inheritance; Congenital stationary night blindness; High myopia; Nyctalopia; Optic disc hypoplasia; Reduced visual acuity
SNAP2922q11.21100%gene with protein product604202Abnormality of eye movement; Abnormality of peripheral nerve conduction; Abnormality of the corpus callosum; Areflexia; Ataxia; Autosomal recessive inheritance; Cortical dysplasia; Depressed nasal bridge; Diffuse palmoplantar keratoderma; Downslanted palpebral fissures; Failure to thrive; Global developmental delay; Hypertelorism; Ichthyosis; Infantile onset; Intellectual disability; Intellectual disability, progressive; Intellectual disability, severe; Long face; Microcephaly; Muscular hypotonia; Optic atrophy; Optic disc hypoplasia; Pachygyria; Palmoplantar keratoderma; Peripheral neuropathy; Polymicrogyria; Polyneuropathy; Poor head control; Progressive microcephaly; Prominent nasal bridge; Sensorineural hearing impairment; Wide nasal bridgePalmoplantar keratoderma plus congenital ichthyosis
TRPM115q13.3100%gene with protein product603576MLSN1Abnormal electroretinogram; Abnormality of macular pigmentation; Congenital stationary night blindness; Dry skin; Eczema; High myopia; Myopia; Nyctalopia; Nystagmus; Optic disc hypoplasia; Reduced visual acuity


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome