XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

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Phenotypes
Nephrocalcinosis

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
AGXT2q37.3100%gene with protein product604285SPATAbnormality of circulating enzyme level; Acrocyanosis; Anemia; Arterial occlusion; Atrioventricular block; Autosomal recessive inheritance; Bone pain; Calcinosis; Calcium oxalate nephrolithiasis; Cutis marmorata; Decreased glomerular filtration rate; Dysuria; Failure to thrive; Gangrene; Hematuria; Hyperoxaluria; Increased bone mineral density; Intermittent claudication; Metabolic acidosis; Nephrocalcinosis; Nephrolithiasis; Optic atrophy; Optic neuropathy; Pathologic fracture; Peripheral arterial stenosis; Peripheral neuropathy; Raynaud phenomenon; Renal insufficiency; Retinal crystals; Retinopathy
AGXT2q37.3100%gene with protein product604285SPATAbnormality of circulating enzyme level; Acrocyanosis; Anemia; Arterial occlusion; Atrioventricular block; Autosomal recessive inheritance; Bone pain; Calcinosis; Calcium oxalate nephrolithiasis; Cutis marmorata; Decreased glomerular filtration rate; Dysuria; Failure to thrive; Gangrene; Hematuria; Hyperoxaluria; Increased bone mineral density; Intermittent claudication; Metabolic acidosis; Nephrocalcinosis; Nephrolithiasis; Optic atrophy; Optic neuropathy; Pathologic fracture; Peripheral arterial stenosis; Peripheral neuropathy; Raynaud phenomenon; Renal insufficiency; Retinal crystals; Retinopathy
ALPL1p36.12100%gene with protein product171760HOPSAbnormality of the dentition; Abnormality of the foot; Abnormality of the voice; Anemia; Anorexia; Apnea; Autosomal dominant inheritance; Autosomal recessive inheritance; Blue sclerae; Bowing of the legs; Carious teeth; Chondrocalcinosis; Constipation; Craniosynostosis; Death in infancy; Decreased calvarial ossification; Disproportionate short-limb short stature; Dolichocephaly; Elevated plasma pyrophosphate; Elevated urine pyrophosphate; Failure to thrive; Fever; Frontal bossing; Generalized hypotonia; Hypercalcemia; Hypercalciuria; Increased susceptibility to fractures; Intracranial hemorrhage; Irritability; Low alkaline phosphatase; Metaphyseal cupping; Micromelia; Myopathy; Nephrocalcinosis; Osteomalacia; Pathologic fracture; Phosphoethanolaminuria; Platyspondyly; Polyhydramnios; Premature loss of permanent teeth; Premature loss of primary teeth; Proptosis; Rachitic rosary; Recurrent fractures; Recurrent respiratory infections; Rickets; Seizures; Short lower limbs; Short ribs; Short stature; Skin dimple over apex of long bone angulation; Stillbirth; Unossified vertebral bodies; Vertebral clefting; Vomiting; Waddling gait; Widely patent fontanelles and sutures
ATP6V0A47q34100%gene with protein product605239ATP6N1B, ATP6N2, RTA1CAutosomal recessive inheritance; Bilateral sensorineural hearing impairment; Dehydration; Distal renal tubular acidosis; Failure to thrive; Growth delay; Nephrocalcinosis; Vomiting
CASR3q13.33-q21.100%gene with protein product601199HHC, HHC1Abdominal pain; Abnormal enzyme/coenzyme activity; Abnormal pattern of respiration; Abnormal renal physiology; Abnormality of calcium-phosphate metabolism; Abnormality of the fingernails; Abnormality of the metaphysis; Abnormality of the thyroid gland; Alopecia; Aminoaciduria; Anemia; Anxiety; Arrhythmia; Autosomal dominant inheritance; Autosomal recessive inheritance; Basal ganglia calcification; Calcinosis; Constipation; Cortical myoclonus; Depressivity; Dry skin; Dyspnea; Elevated C-reactive protein level; Elevated circulating parathyroid hormone level; EMG abnormality; Emotional lability; Failure to thrive; Fatigable weakness; Feeding difficulties in infancy; Generalized hypotonia; Hepatomegaly; Hypercalcemia; Hypercalciuria; Hypermagnesemia; Hypermagnesiuria; Hyperparathyroidism; Hyperphosphatemia; Hyperphosphaturia; Hypocalcemia; Hypocalciuria; Hypomagnesemia; Hypophosphatemia; Hypotension; Leukocytosis; Metaphyseal irregularity; Muscle cramps; Muscular hypotonia; Narrow chest; Nephrocalcinosis; Nephrolithiasis; Pancreatitis; Paresthesia; Polydipsia; Polyuria; Primary hyperparathyroidism; Recurrent fractures; Recurrent pancreatitis; Seizures; Short stature; Splenomegaly; Tachypnea; Tetany
CASR3q13.33-q21.100%gene with protein product601199HHC, HHC1Abdominal pain; Abnormal enzyme/coenzyme activity; Abnormal pattern of respiration; Abnormal renal physiology; Abnormality of calcium-phosphate metabolism; Abnormality of the fingernails; Abnormality of the metaphysis; Abnormality of the thyroid gland; Alopecia; Aminoaciduria; Anemia; Anxiety; Arrhythmia; Autosomal dominant inheritance; Autosomal recessive inheritance; Basal ganglia calcification; Calcinosis; Constipation; Cortical myoclonus; Depressivity; Dry skin; Dyspnea; Elevated C-reactive protein level; Elevated circulating parathyroid hormone level; EMG abnormality; Emotional lability; Failure to thrive; Fatigable weakness; Feeding difficulties in infancy; Generalized hypotonia; Hepatomegaly; Hypercalcemia; Hypercalciuria; Hypermagnesemia; Hypermagnesiuria; Hyperparathyroidism; Hyperphosphatemia; Hyperphosphaturia; Hypocalcemia; Hypocalciuria; Hypomagnesemia; Hypophosphatemia; Hypotension; Leukocytosis; Metaphyseal irregularity; Muscle cramps; Muscular hypotonia; Narrow chest; Nephrocalcinosis; Nephrolithiasis; Pancreatitis; Paresthesia; Polydipsia; Polyuria; Primary hyperparathyroidism; Recurrent fractures; Recurrent pancreatitis; Seizures; Short stature; Splenomegaly; Tachypnea; Tetany
CDC731q31.2100%gene with protein productFormer name = HRPT2607393C1orf28, HRPT2, HRPT1Autosomal dominant inheritance; Chondrocalcinosis; Dysphagia; Elevated circulating parathyroid hormone level; Fatigue; Fibroma; Generalized osteoporosis; Hoarse voice; Hypercalcemia; Hypercalciuria; Hyperparathyroidism; Hyperphosphaturia; Hypophosphatemia; Infantile hypercalcemia; Nephrocalcinosis; Nephrolithiasis; Osteopenia; Osteoporosis; Parathyroid adenoma; Parathyroid carcinoma; Polydipsia; Primary hyperparathyroidism; Shortened QT interval; Somatic mutation; Uterine leiomyoma; Weight loss
CDC731q31.2100%gene with protein productFormer name = HRPT2607393C1orf28, HRPT2, HRPT1Autosomal dominant inheritance; Chondrocalcinosis; Dysphagia; Elevated circulating parathyroid hormone level; Fatigue; Fibroma; Generalized osteoporosis; Hoarse voice; Hypercalcemia; Hypercalciuria; Hyperparathyroidism; Hyperphosphaturia; Hypophosphatemia; Infantile hypercalcemia; Nephrocalcinosis; Nephrolithiasis; Osteopenia; Osteoporosis; Parathyroid adenoma; Parathyroid carcinoma; Polydipsia; Primary hyperparathyroidism; Shortened QT interval; Somatic mutation; Uterine leiomyoma; Weight loss
CDC731q31.2100%gene with protein productFormer name = HRPT2607393C1orf28, HRPT2, HRPT1Autosomal dominant inheritance; Chondrocalcinosis; Dysphagia; Elevated circulating parathyroid hormone level; Fatigue; Fibroma; Generalized osteoporosis; Hoarse voice; Hypercalcemia; Hypercalciuria; Hyperparathyroidism; Hyperphosphaturia; Hypophosphatemia; Infantile hypercalcemia; Nephrocalcinosis; Nephrolithiasis; Osteopenia; Osteoporosis; Parathyroid adenoma; Parathyroid carcinoma; Polydipsia; Primary hyperparathyroidism; Shortened QT interval; Somatic mutation; Uterine leiomyoma; Weight loss
CDKN1C11p15.487.26%gene with protein product600856BWCR, BWSAccelerated skeletal maturation; Adrenal hypoplasia; Adrenocortical carcinoma; Adrenocortical cytomegaly; Autosomal dominant inheritance; Cardiomegaly; Cardiomyopathy; Coarse facial features; Cryptorchidism; Dandy-Walker malformation; Decreased testicular size; Delayed skeletal maturation; Depressed nasal bridge; Diastasis recti; Enlarged kidney; Epiphyseal dysplasia; Frontal bossing; Gonadoblastoma; Growth hormone deficiency; Hemihypertrophy; Hepatoblastoma; Hepatomegaly; Hydronephrosis; Hypercalcemia; Hypercalciuria; Hypogonadism; Hypospadias; Intrauterine growth retardation; Large fontanelles; Low-set ears; Macroglossia; Metaphyseal dysplasia; Micromelia; Micropenis; Midface retrusion; Muscular hypotonia; Neonatal hypoglycemia; Nephroblastoma; Nephrocalcinosis; Nephrolithiasis; Nevus flammeus; Omphalocele; Overgrowth; Overgrowth of external genitalia; Pancreatic hyperplasia; Posterior helix pit; Postnatal growth retardation; Prominent forehead; Prominent metopic ridge; Prominent occiput; Proptosis; Renal cortical cysts; Short nose; Short stature; Vesicoureteral refluxDisorders of Sex Development
CLCN5Xp11.23100%gene with protein product300008NPHL2, NPHL1Aminoaciduria; Bone pain; Bowing of the legs; Bulging epiphyses; Chronic kidney disease; Delayed epiphyseal ossification; Enlargement of the ankles; Enlargement of the wrists; Femoral bowing; Fibular bowing; Focal segmental glomerulosclerosis; Glomerulosclerosis; Glycosuria; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Low-molecular-weight proteinuria; Metaphyseal irregularity; Microscopic hematuria; Nephrocalcinosis; Nephrolithiasis; Osteomalacia; Phenotypic variability; Proximal tubulopathy; Recurrent fractures; Renal insufficiency; Renal phosphate wasting; Rickets; Short stature; Slow progression; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Tubular atrophy; Tubulointerstitial fibrosis; X-linked recessive inheritance
CLCN5Xp11.23100%gene with protein product300008NPHL2, NPHL1Aminoaciduria; Bone pain; Bowing of the legs; Bulging epiphyses; Chronic kidney disease; Delayed epiphyseal ossification; Enlargement of the ankles; Enlargement of the wrists; Femoral bowing; Fibular bowing; Focal segmental glomerulosclerosis; Glomerulosclerosis; Glycosuria; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Low-molecular-weight proteinuria; Metaphyseal irregularity; Microscopic hematuria; Nephrocalcinosis; Nephrolithiasis; Osteomalacia; Phenotypic variability; Proximal tubulopathy; Recurrent fractures; Renal insufficiency; Renal phosphate wasting; Rickets; Short stature; Slow progression; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Tubular atrophy; Tubulointerstitial fibrosis; X-linked recessive inheritance
CLCN5Xp11.23100%gene with protein product300008NPHL2, NPHL1Aminoaciduria; Bone pain; Bowing of the legs; Bulging epiphyses; Chronic kidney disease; Delayed epiphyseal ossification; Enlargement of the ankles; Enlargement of the wrists; Femoral bowing; Fibular bowing; Focal segmental glomerulosclerosis; Glomerulosclerosis; Glycosuria; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Low-molecular-weight proteinuria; Metaphyseal irregularity; Microscopic hematuria; Nephrocalcinosis; Nephrolithiasis; Osteomalacia; Phenotypic variability; Proximal tubulopathy; Recurrent fractures; Renal insufficiency; Renal phosphate wasting; Rickets; Short stature; Slow progression; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Tubular atrophy; Tubulointerstitial fibrosis; X-linked recessive inheritance
CLCN5Xp11.23100%gene with protein product300008NPHL2, NPHL1Aminoaciduria; Bone pain; Bowing of the legs; Bulging epiphyses; Chronic kidney disease; Delayed epiphyseal ossification; Enlargement of the ankles; Enlargement of the wrists; Femoral bowing; Fibular bowing; Focal segmental glomerulosclerosis; Glomerulosclerosis; Glycosuria; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Low-molecular-weight proteinuria; Metaphyseal irregularity; Microscopic hematuria; Nephrocalcinosis; Nephrolithiasis; Osteomalacia; Phenotypic variability; Proximal tubulopathy; Recurrent fractures; Renal insufficiency; Renal phosphate wasting; Rickets; Short stature; Slow progression; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Tubular atrophy; Tubulointerstitial fibrosis; X-linked recessive inheritance
CLDN163q28100%gene with protein product603959Abdominal pain; Astigmatism; Autosomal recessive inheritance; Chronic kidney disease; Failure to thrive; Feeding difficulties in infancy; Hematuria; Hypercalciuria; Hypermagnesiuria; Hypermetropia; Hyperuricemia; Hypocitraturia; Hypomagnesemia; Juvenile onset; Myopia; Nephrocalcinosis; Nephrolithiasis; Nystagmus; Polydipsia; Polyuria; Recurrent urinary tract infections; Renal calcium wasting; Renal magnesium wasting; Renal tubular acidosis; Seizures; Strabismus; Tetany
CLDN191p34.2100%gene with protein product610036Abnormality of calcium-phosphate metabolism; Abnormality of retinal pigmentation; Autosomal recessive inheritance; Chorioretinal coloboma; Chronic kidney disease; Hematuria; Hypercalciuria; Hypermagnesiuria; Hypomagnesemia; Inguinal hernia; Macular coloboma; Myopia; Nephrocalcinosis; Nephrolithiasis; Nephropathy; Nystagmus; Recurrent urinary tract infections; Renal calcium wasting; Renal magnesium wasting; Tapetoretinal degeneration
COL4A32q36.3100%gene with protein product120070Anterior lenticonus; Anterior polar cataract; Autosomal dominant inheritance; Autosomal recessive inheritance; Azotemia; Cataract; Corneal erosion; Diffuse glomerular basement membrane lamellation; Glomerulonephritis; Hearing impairment; Hematuria; Heterogeneous; Hypertension; Hypophosphatemia; Lenticonus; Myopia; Nephritis; Nephrocalcinosis; Nephrotic syndrome; Nonprogressive; Progressive; Proteinuria; Sensorineural hearing impairment; Stage 5 chronic kidney disease; Thickening of the glomerular basement membrane; Thin glomerular basement membraneNephrotic Syndrome
CYP24A120q13.299.7%gene with protein product126065CYP24Abnormality of the eye; Aortic valve stenosis; Autosomal dominant inheritance; Autosomal recessive inheritance; Dehydration; Elfin facies; Failure to thrive; Generalized hypotonia; Hypercalciuria; Infantile hypercalcemia; Intellectual disability; Lethargy; Nephrocalcinosis; Polyuria; Pulmonic stenosis; Thick lower lip vermilion; Vomiting; Weight loss
FAH15q25.1100%gene with protein product613871Abnormal bleeding; Abnormality of coagulation; Abnormality of the abdominal wall; Acute hepatic failure; Ascites; Autosomal recessive inheritance; Cirrhosis; Elevated alpha-fetoprotein; Elevated hepatic transaminases; Elevated urinary delta-aminolevulinic acid; Enlarged kidney; Episodic peripheral neuropathy; Failure to thrive; Gastrointestinal hemorrhage; Generalized aminoaciduria; Glomerulosclerosis; Hepatocellular carcinoma; Hepatomegaly; Hypermethioninemia; Hypertrophic cardiomyopathy; Hypertyrosinemia; Hypoglycemia; Hypophosphatemic rickets; Nephrocalcinosis; Pancreatic islet-cell hyperplasia; Paralytic ileus; Periodic paralysis; Renal Fanconi syndrome; Renal insufficiency; Splenomegaly
FAM20A17q24.2100%gene with protein product611062Abnormality of calcium-phosphate metabolism; Amelogenesis imperfecta; Autosomal recessive inheritance; Dagger-shaped pulp calcifications; Delayed eruption of permanent teeth; Delayed eruption of teeth; Enuresis; Gingival fibromatosis; Gingival overgrowth; Impaired renal concentrating ability; Intellectual disability; Nephrocalcinosis; Nephropathy; Overgrowth; Polyuria; Pulp stones; Renal insufficiency; Subcutaneous nodule; Yellow-brown discoloration of the teeth
FAM20A17q24.2100%gene with protein product611062Abnormality of calcium-phosphate metabolism; Amelogenesis imperfecta; Autosomal recessive inheritance; Dagger-shaped pulp calcifications; Delayed eruption of permanent teeth; Delayed eruption of teeth; Enuresis; Gingival fibromatosis; Gingival overgrowth; Impaired renal concentrating ability; Intellectual disability; Nephrocalcinosis; Nephropathy; Overgrowth; Polyuria; Pulp stones; Renal insufficiency; Subcutaneous nodule; Yellow-brown discoloration of the teeth
GCM26p24.2100%gene with protein product603716GCMBAutosomal dominant inheritance; Cataract; Cerebral calcification; Chondrocalcinosis; Congenital hypoparathyroidism; Elevated circulating parathyroid hormone level; Generalized osteoporosis; Hypercalcemia; Hypercalciuria; Hyperphosphatemia; Hyperphosphaturia; Hypocalcemia; Hypocalcemic seizures; Hypoparathyroidism; Hypophosphatemia; Infantile hypercalcemia; Male infertility; Nephrocalcinosis; Osteopenia; Parathyroid adenoma; Parathyroid agenesis; Primary hyperparathyroidism; Seizures; Tetany
GNA1119p13.399.98%gene with protein product139313HHC2Abdominal pain; Abnormal pattern of respiration; Abnormality of the fingernails; Alopecia; Anxiety; Arrhythmia; Choroidal melanoma; Ciliary body melanoma; Cortical myoclonus; Depressivity; Dry skin; EMG abnormality; Emotional lability; Fatigable weakness; Hypercalciuria; Hypermagnesiuria; Hyperphosphatemia; Hypocalcemia; Hypomagnesemia; Hypotension; Iris melanoma; Nephrocalcinosis; Paresthesia; Retinal detachment; Visual loss
GRHPR9p13.2100%gene with protein product604296GLXRAminoaciduria; Autosomal recessive inheritance; Calcium oxalate nephrolithiasis; Hematuria; Hyperoxaluria; Nephrocalcinosis; Nephrolithiasis; Recurrent urinary tract infections; Ureteral obstruction; Variable expressivity
GRHPR9p13.2100%gene with protein product604296GLXRAminoaciduria; Autosomal recessive inheritance; Calcium oxalate nephrolithiasis; Hematuria; Hyperoxaluria; Nephrocalcinosis; Nephrolithiasis; Recurrent urinary tract infections; Ureteral obstruction; Variable expressivity
H1911p15.5RNA, long non-codingXomeDxSlice is not appropriate.103280Abdominal pain; Abnormality of the cardiovascular system; Abnormality of the dentition; Abnormality of the foot; Abnormality of the ureter; Accelerated skeletal maturation; Adrenocortical carcinoma; Adrenocortical cytomegaly; Asymmetry of the thorax; Autosomal dominant inheritance; Blue sclerae; Cafe-au-lait spot; Cardiomegaly; Cardiomyopathy; Clinodactyly of the 5th finger; Coarse facial features; Congenital posterior urethral valve; Craniofacial disproportion; Craniopharyngioma; Cryptorchidism; Dandy-Walker malformation; Delayed cranial suture closure; Delayed skeletal maturation; Diastasis recti; Downturned corners of mouth; Enlarged kidney; Facial asymmetry; Fasting hypoglycemia; Frontal bossing; Global developmental delay; Gonadoblastoma; Growth hormone deficiency; Hemihypertrophy; Hepatoblastoma; Hepatocellular carcinoma; Hepatomegaly; Heterogeneous; Hypospadias; Intellectual disability, mild; Intrauterine growth retardation; Large fontanelles; Macroglossia; Micrognathia; Midface retrusion; Neonatal hypoglycemia; Nephroblastoma; Nephrocalcinosis; Nephrolithiasis; Nevus flammeus; Omphalocele; Overgrowth; Overgrowth of external genitalia; Pancreatic hyperplasia; Posterior helix pit; Prominent metopic ridge; Prominent occiput; Proptosis; Renal cortical cysts; Scoliosis; Short distal phalanx of the 5th finger; Short middle phalanx of the 5th finger; Small for gestational age; Somatic mutation; Sporadic; Syndactyly; Testicular seminoma; Triangular face; Vesicoureteral reflux
HNF4A20q13.12100%gene with protein product600281TCF14, MODY, MODY1Abnormality of fatty-acid metabolism; Agitation; Aminoaciduria; Autosomal dominant inheritance; Coma; Diabetes mellitus; Diarrhea; Drowsiness; Elevated alkaline phosphatase; Elevated hepatic transaminases; Fasting hypoglycemia; Fatigue; Glycosuria; Hepatomegaly; Hyperhidrosis; Hyperinsulinemic hypoglycemia; Hyperphosphaturia; Hypoglycemia; Hypoketotic hypoglycemia; Hypophosphatemic rickets; Hypouricemia; Increased hepatic glycogen content; Intellectual disability; Large for gestational age; Lethargy; Maturity-onset diabetes of the young; Metabolic ketoacidosis; Multicystic kidney dysplasia; Neonatal hypoglycemia; Neonatal hypotonia; Nephrocalcinosis; Pallor; Pancreatic islet-cell hyperplasia; Progressive neurologic deterioration; Proteinuria; Renal Fanconi syndrome; Rickets; Seizures; Short stature; Tachycardia; Tremor; Vomiting
HOGA110q24.2100%gene with protein product613597C10orf65, DHDPSLAutosomal recessive inheritance; Calcium oxalate nephrolithiasis; Dysuria; Hematuria; Hyperoxaluria; Nephrocalcinosis; Pain; Pollakisuria
IGF211p15.5100%gene with protein product147470C11orf43Abnormality of the cardiovascular system; Abnormality of the dentition; Abnormality of the foot; Abnormality of the ureter; Accelerated skeletal maturation; Adrenocortical carcinoma; Adrenocortical cytomegaly; Asymmetry of the thorax; Autosomal dominant inheritance; Blue sclerae; Cafe-au-lait spot; Cardiomegaly; Cardiomyopathy; Clinodactyly of the 5th finger; Coarse facial features; Congenital posterior urethral valve; Craniofacial disproportion; Craniopharyngioma; Cryptorchidism; Dandy-Walker malformation; Decreased body weight; Delayed cranial suture closure; Delayed skeletal maturation; Diastasis recti; Downturned corners of mouth; Enlarged kidney; Facial asymmetry; Fasting hypoglycemia; Feeding difficulties in infancy; Frontal bossing; Generalized hypotonia; Global developmental delay; Gonadoblastoma; Growth hormone deficiency; Hemihypertrophy; Hepatoblastoma; Hepatocellular carcinoma; Hepatomegaly; Heterogeneous; Hypospadias; Intellectual disability, mild; Intrauterine growth retardation; Large fontanelles; Low-set ears; Macroglossia; Melanocytic nevus; Micrognathia; Midface retrusion; Motor delay; Neonatal hypoglycemia; Nephroblastoma; Nephrocalcinosis; Nephrolithiasis; Nevus flammeus; Omphalocele; Overgrowth; Overgrowth of external genitalia; Pancreatic hyperplasia; Posterior helix pit; Prominent forehead; Prominent metopic ridge; Prominent occiput; Proptosis; Relative macrocephaly; Renal cortical cysts; Scoliosis; Short distal phalanx of the 5th finger; Short middle phalanx of the 5th finger; Short stature; Small for gestational age; Somatic mutation; Sporadic; Syndactyly; Testicular seminoma; Triangular face; Vesicoureteral reflux; X-linked recessive inheritance
KCNJ111q24.3100%gene with protein product600359Abnormally large globe; Autosomal recessive inheritance; Chondrocalcinosis; Constipation; Dehydration; Diarrhea; Failure to thrive; Fetal polyuria; Fever; Frontal bossing; Generalized muscle weakness; Global developmental delay; Heterogeneous; Hyperactive renin-angiotensin system; Hyperaldosteronism; Hypercalciuria; Hyperchloriduria; Hyperprostaglandinuria; Hypochloremia; Hypokalemia; Hypokalemic metabolic alkalosis; Hyposthenuria; Impaired platelet aggregation; Increased circulating renin level; Increased serum prostaglandin E2; Increased urinary potassium; Intellectual disability; Low-to-normal blood pressure; Macrocephaly; Macrotia; Muscle cramps; Nephrocalcinosis; Osteopenia; Paresthesia; Polydipsia; Polyhydramnios; Polyuria; Premature birth; Prominent forehead; Renal juxtaglomerular cell hypertrophy/hyperplasia; Renal potassium wasting; Renal salt wasting; Seizures; Short stature; Small for gestational age; Tetany; Triangular face; Vomiting
KCNQ111p15.5-p15.100%gene with protein product607542LQT, KCNA9Abnormality of the ear; Accelerated skeletal maturation; Adrenocortical carcinoma; Adrenocortical cytomegaly; Atrial fibrillation; Autosomal dominant inheritance; Autosomal recessive inheritance; Bradycardia; Cardiomegaly; Cardiomyopathy; Coarse facial features; Congenital sensorineural hearing impairment; Cryptorchidism; Dandy-Walker malformation; Diastasis recti; Enlarged kidney; Gonadoblastoma; Hemihypertrophy; Hepatoblastoma; Hepatomegaly; Heterogeneous; Large fontanelles; Macroglossia; Midface retrusion; Neonatal hypoglycemia; Nephroblastoma; Nephrocalcinosis; Nephrolithiasis; Nevus flammeus; Omphalocele; Overgrowth; Overgrowth of external genitalia; Palpitations; Pancreatic hyperplasia; Posterior helix pit; Prolonged QT interval; Prominent metopic ridge; Prominent occiput; Proptosis; Renal cortical cysts; Shortened QT interval; Sudden cardiac death; Syncope; Tachycardia; Thromboembolic stroke; Torsade de pointes; Ventricular fibrillation; Vesicoureteral reflux
KCNQ1OT111p15.5RNA, long non-codingXomeDxSlice is not appropriate.604115LIT1Abnormality of the dentition; Accelerated skeletal maturation; Adrenocortical carcinoma; Adrenocortical cytomegaly; Asymmetry of the thorax; Autosomal dominant inheritance; Cardiomegaly; Cardiomyopathy; Coarse facial features; Cryptorchidism; Dandy-Walker malformation; Diastasis recti; Enlarged kidney; Facial asymmetry; Gonadoblastoma; Hemihypertrophy; Hepatoblastoma; Hepatomegaly; Intellectual disability, mild; Large fontanelles; Macroglossia; Midface retrusion; Neonatal hypoglycemia; Nephroblastoma; Nephrocalcinosis; Nephrolithiasis; Nevus flammeus; Omphalocele; Overgrowth; Overgrowth of external genitalia; Pancreatic hyperplasia; Posterior helix pit; Prominent metopic ridge; Prominent occiput; Proptosis; Renal cortical cysts; Scoliosis; Vesicoureteral reflux
MEN111q13100%gene with protein product613733Abnormality of hair density; Abnormality of the pancreatic islet cells; Abnormality of the thyroid gland; Adenoma sebaceum; Adrenocortical adenoma; Adrenocorticotropic hormone deficiency; Adrenocorticotropin deficient adrenal insufficiency; Amenorrhea; Angiofibromas; Autosomal dominant inheritance; Cafe-au-lait spot; Carcinoid tumor; Chondrocalcinosis; Confetti-like hypopigmented macules; Decreased circulating ACTH level; Decreased female libido; Decreased fertility in females; Decreased fertility in males; Diarrhea; Dyspareunia; Easy fatigability; Elevated circulating parathyroid hormone level; Episodic abdominal pain; Esophagitis; Fasting hyperinsulinemia; Fatigue; Female hypogonadism; Fluctuations in consciousness; Galactorrhea; Generalized muscle weakness; Generalized osteoporosis; Glucagonoma; Growth hormone excess; Gynecomastia; Headache; Hypercalcemia; Hypercalciuria; Hyperhidrosis; Hyperinsulinemic hypoglycemia; Hyperparathyroidism; Hyperphosphaturia; Hypoglycemia; Hypogonadotrophic hypogonadism; Hypophosphatemia; Hypotension; Impotence; Increased body weight; Increased circulating cortisol level; Infantile hypercalcemia; Insulinoma; Male hypogonadism; Nephrocalcinosis; Nonketotic hypoglycemia; Osteopenia; Osteoporosis; Pallor; Palpitations; Parathyroid adenoma; Parathyroid hyperplasia; Peptic ulcer; Pituitary adenoma; Pituitary growth hormone cell adenoma; Pituitary hypothyroidism; Pituitary null cell adenoma; Pituitary prolactin cell adenoma; Polyphagia; Primary hyperparathyroidism; Progressive visual loss; Prolactinoma; Reactive hypoglycemia; Recurrent hypoglycemia; Secondary growth hormone deficiency; Seizures; Subcutaneous lipoma; Thyroid adenoma; Transient global amnesia; Tremor; Vomiting; Zollinger-Ellison syndromeEctodermal Dysplasia
MYO5B18q99.98%gene with protein product606540Abdominal distention; Abnormal renal physiology; Autosomal recessive inheritance; Death in infancy; Dehydration; Diarrhea; Global developmental delay; Growth delay; Hypovolemia; Malnutrition; Metabolic acidosis; Nephrocalcinosis; Protracted diarrhea; Pruritus; Villous atrophyInflammatory Bowel Disease
NSD15q35.3100%gene with protein product606681STOAbnormal glucose tolerance; Abnormality of immune system physiology; Abnormality of the fingernails; Abnormality of the metaphysis; Abnormally low-pitched voice; Accelerated skeletal maturation; Adrenocortical carcinoma; Adrenocortical cytomegaly; Advanced eruption of teeth; Anteverted nares; Aplasia/Hypoplasia of the corpus callosum; Atrial septal defect; Autosomal dominant inheritance; Behavioral abnormality; Broad foot; Broad forehead; Broad thumb; Camptodactyly of finger; Cardiomegaly; Cardiomyopathy; Cavum septum pellucidum; Coarse facial features; Conductive hearing impairment; Cryptorchidism; Dandy-Walker malformation; Deep philtrum; Deep-set nails; Delayed skeletal maturation; Depressed nasal ridge; Diastasis recti; Dolichocephaly; Downslanted palpebral fissures; Enlarged cisterna magna; Enlarged kidney; Expressive language delay; Feeding difficulties in infancy; Fine hair; Frontal bossing; Genu valgum; Global developmental delay; Gonadoblastoma; Hemihypertrophy; Hepatoblastoma; Hepatomegaly; High anterior hairline; High forehead; High palate; High, narrow palate; Hoarse voice; Hypermetropia; Hyperreflexia; Hypertelorism; Hypoglycemia; Hypoplastic toenails; Inguinal hernia; Intellectual disability; Joint laxity; Joint stiffness; Large fontanelles; Large hands; Long foot; Long philtrum; Low-set, posteriorly rotated ears; Macrocephaly; Macroglossia; Macrotia; Mandibular prognathia; Microcephaly; Micrognathia; Midface retrusion; Muscular hypotonia; Myopia; Narrow palate; Neonatal hypoglycemia; Neonatal hypotonia; Nephroblastoma; Nephrocalcinosis; Nephrolithiasis; Nevus flammeus; Nystagmus; Obesity; Omphalocele; Otitis media; Overgrowth; Overgrowth of external genitalia; Pancreatic hyperplasia; Partial agenesis of the corpus callosum; Patent ductus arteriosus; Pes planus; Pointed chin; Poor coordination; Posterior helix pit; Precocious puberty; Prominent forehead; Prominent metopic ridge; Prominent occiput; Proptosis; Redundant skin; Renal cortical cysts; Retrognathia; Round face; Scoliosis; Seizures; Short stature; Small nail; Spasticity; Specific learning disability; Sporadic; Strabismus; Tall stature; Thin nail; Ventricular septal defect; Ventriculomegaly; Vesicoureteral refluxObesity
PEX36q24.299.76%gene with protein product603164Abnormal chorioretinal morphology; Abnormality of metabolism/homeostasis; Abnormality of movement; Abnormality of neuronal migration; Abnormality of retinal pigmentation; Abnormality of the liver; Abnormality of the palate; Anteverted nares; Areflexia; Ataxia; Autosomal recessive inheritance; Behavioral abnormality; Bilateral single transverse palmar creases; Broad forehead; Cataract; Clitoral hypertrophy; Cognitive impairment; Constriction of peripheral visual field; Corneal opacity; Cryptorchidism; Death in infancy; Decreased fetal movement; Depressed nasal bridge; Developmental regression; Dolichocephaly; Downslanted palpebral fissures; EEG abnormality; Elevated levels of phytanic acid; Epicanthus; Epiphyseal stippling; External ear malformation; Failure to thrive; Feeding difficulties; Feeding difficulties in infancy; Flat face; Flat occiput; Generalized hypotonia; Generalized neonatal hypotonia; Global developmental delay; Hepatic failure; Hepatomegaly; High forehead; High palate; Hydronephrosis; Hyperreflexia; Hypertelorism; Hypospadias; Inverted nipples; Jaundice; Low-set ears; Low-set, posteriorly rotated ears; Macrocephaly; Malabsorption; Microcephaly; Micrognathia; Multicystic kidney dysplasia; Muscular hypotonia; Nephrocalcinosis; Neurogenic bladder; Nyctalopia; Nystagmus; Optic atrophy; Polymicrogyria; Posterior embryotoxon; Posteriorly rotated ears; Premature birth; Primary adrenal insufficiency; Profound global developmental delay; Progressive muscle weakness; Prolonged neonatal jaundice; Prominent nose; Ptosis; Pyloric stenosis; Reduced tendon reflexes; Respiratory insufficiency; Rod-cone dystrophy; Seizures; Sensorineural hearing impairment; Severe global developmental delay; Severe muscular hypotonia; Short stature; Skeletal dysplasia; Spastic paraplegia; Spasticity; Strabismus; Underdeveloped supraorbital ridges; Upslanted palpebral fissure; Very long chain fatty acid accumulation; Visual impairment; Wide anterior fontanel; Wide nasal bridge
PIGT20q13.12100%gene with protein product610272Abdominal pain; Abnormality of the dentition; Arthralgia; Autosomal dominant inheritance; Autosomal recessive inheritance; Brachycephaly; Cerebellar hypoplasia; Cerebral atrophy; Deep philtrum; Delayed skeletal maturation; Depressed nasal bridge; Diarrhea; Downturned corners of mouth; Dyspnea; EEG abnormality; Fatigue; Generalized hypotonia; Global developmental delay; Headache; Hemolytic anemia; High forehead; High palate; Hypercalciuria; Hypermetropia; Hypoplasia of the ulna; Infantile onset; Inverted nipples; Large for gestational age; Long philtrum; Macrocephaly; Narrow forehead; Nephrocalcinosis; Nystagmus; Open mouth; Osteopenia; Osteoporosis; Paroxysmal nocturnal hemoglobinuria; Patent ductus arteriosus; Pectus excavatum; Renal cyst; Restrictive cardiomyopathy; Scoliosis; Seizures; Somatic mutation; Strabismus; Ureteral stenosis; Urticaria; Visual impairment
PTH1R3p21.3199.98%gene with protein product168468PTHR, PTHR1Abnormal trabecular bone morphology; Abnormality of epiphysis morphology; Abnormality of the acetabulum; Abnormality of the fingertips; Abnormality of the metaphysis; Absence of the sacrum; Accelerated skeletal maturation; Advanced ossification of carpal bones; Advanced tarsal ossification; Anteverted nares; Aplastic clavicles; Arthralgia; Autosomal dominant inheritance; Autosomal recessive inheritance; Bone pain; Bowing of the long bones; Brachycephaly; Broad clavicles; Broad foot; Broad palm; Cataract; Choanal atresia; Choanal stenosis; Clinodactyly of the 5th finger; Clubbing of fingers; Cubitus valgus; Delayed epiphyseal ossification; Depressed nasal bridge; Distal shortening of limbs; Elevated alkaline phosphatase; Epiphyseal dysplasia; Failure of eruption of permanent teeth; Fibular hypoplasia; Flared metaphysis; Generalized osteosclerosis; Hearing impairment; High iliac wings; Hip contracture; Hydrops fetalis; Hypercalcemia; Hypercalciuria; Hyperphosphaturia; Hypertelorism; Hypodontia; Hypoparathyroidism; Hypophosphatemia; Increased bone mineral density; Joint stiffness; Knee flexion contracture; Laryngeal calcification; Lethal skeletal dysplasia; Limited elbow flexion; Limited hip movement; Long philtrum; Low-set ears; Malar flattening; Mesomelia; Metaphyseal chondrodysplasia; Metaphyseal cupping; Metaphyseal irregularity; Micrognathia; Micromelia; Misalignment of teeth; Multiple enchondromatosis; Narrow chest; Narrow pelvis bone; Natal tooth; Neonatal short-limb short stature; Nephrocalcinosis; Osteolysis; Osteopenia; Pathologic fracture; Persistence of primary teeth; Platyspondyly; Polyhydramnios; Premature birth; Prominent supraorbital arches in adult; Proptosis; Protruding tongue; Protuberant abdomen; Pulmonary hypoplasia; Rhizomelia; Severe short stature; Short foot; Short long bone; Short metacarpal; Short nose; Short palm; Short phalanx of finger; Short ribs; Short stature; Short thorax; Short toe; Skeletal dysplasia; Squared iliac bones; Stillbirth; Subcutaneous nodule; Synostosis of joints; Telecanthus; Thick skull base; Thin bony cortex; Visceral angiomatosis; Waddling gaitEctodermal Dysplasia
SBDS7q11.21100%gene with protein product607444Abnormality of the metaphysis; Acute myeloid leukemia; Anemia; Autosomal recessive inheritance; Coxa vara; Delayed skeletal maturation; Eczema; Elevated hepatic transaminases; Enlargement of the costochondral junction; Exocrine pancreatic insufficiency; Failure to thrive; Generalized hypotonia; Global developmental delay; Hepatomegaly; Ichthyosis; Intellectual disability; Intellectual disability, mild; Irregular ossification at anterior rib ends; Malabsorption; Metaphyseal chondrodysplasia; Metaphyseal sclerosis; Metaphyseal widening; Myelodysplasia; Myocardial necrosis; Narrow chest; Narrow sacroiliac notch; Neonatal respiratory distress; Nephrocalcinosis; Neutropenia; Osteopenia; Ovoid vertebral bodies; Pancytopenia; Persistence of hemoglobin F; Proximal femoral epiphysiolysis; Recurrent infections; Short stature; Small for gestational age; Specific learning disability; Steatorrhea; ThrombocytopeniaAplastic Anemia ; Bone Marrow Failure Syndromes ; Primary Immunodeficiency
SLC12A115q21.1100%gene with protein product600839Autosomal recessive inheritance; Chondrocalcinosis; Constipation; Dehydration; Diarrhea; Failure to thrive; Fetal polyuria; Fever; Generalized muscle weakness; Global developmental delay; Heterogeneous; Hyperactive renin-angiotensin system; Hyperaldosteronism; Hypercalcemia; Hypercalciuria; Hyperchloriduria; Hyperprostaglandinuria; Hypochloremia; Hypokalemia; Hypokalemic metabolic alkalosis; Hypomagnesemia; Hyposthenuria; Increased circulating renin level; Increased serum prostaglandin E2; Increased urinary potassium; Intellectual disability; Low-to-normal blood pressure; Muscle cramps; Nephrocalcinosis; Osteopenia; Paresthesia; Polyhydramnios; Polyuria; Premature birth; Renal juxtaglomerular cell hypertrophy/hyperplasia; Renal potassium wasting; Renal salt wasting; Seizures; Short stature; Small for gestational age; Tetany; Vomiting
SLC4A117q21.31100%gene with protein product109270EPB3, AE1, DI, WDAbnormality of metabolism/homeostasis; Anorexia; Autosomal dominant inheritance; Autosomal recessive inheritance; Distal renal tubular acidosis; Elliptocytosis; Failure to thrive; Hemolytic anemia; Hepatosplenomegaly; Hyperbilirubinemia; Hyperchloremic metabolic acidosis; Hypocalcemia; Hypokalemia; Increased red cell osmotic fragility; Isothenuria; Jaundice; Lethargy; Metabolic acidosis; Nephrocalcinosis; Osteomalacia; Pallor; Pathologic fracture; Periodic hypokalemic paresis; Periodic paralysis; Postnatal growth retardation; Renal tubular acidosis; Reticulocytosis; Rickets; Short stature; Spherocytosis; Splenomegaly; StomatocytosisHemolytic Anemia
SLC4A117q21.31100%gene with protein product109270EPB3, AE1, DI, WDAbnormality of metabolism/homeostasis; Anorexia; Autosomal dominant inheritance; Autosomal recessive inheritance; Distal renal tubular acidosis; Elliptocytosis; Failure to thrive; Hemolytic anemia; Hepatosplenomegaly; Hyperbilirubinemia; Hyperchloremic metabolic acidosis; Hypocalcemia; Hypokalemia; Increased red cell osmotic fragility; Isothenuria; Jaundice; Lethargy; Metabolic acidosis; Nephrocalcinosis; Osteomalacia; Pallor; Pathologic fracture; Periodic hypokalemic paresis; Periodic paralysis; Postnatal growth retardation; Renal tubular acidosis; Reticulocytosis; Rickets; Short stature; Spherocytosis; Splenomegaly; StomatocytosisHemolytic Anemia
STX311q12.1100%gene with protein product600876STX3AAbdominal distention; Abnormal renal physiology; Dehydration; Diarrhea; Global developmental delay; Hypovolemia; Metabolic acidosis; Nephrocalcinosis; Pruritus; Villous atrophy
VIPAS3914q24.3100%gene with protein product613401C14orf133Arthrogryposis multiplex congenita; Autosomal recessive inheritance; Cholestatic liver disease; Conjugated hyperbilirubinemia; Elevated hepatic transaminases; Failure to thrive; Generalized hypotonia; Giant cell hepatitis; Global developmental delay; Hip dysplasia; Ichthyosis; Jaundice; Low-set ears; Metabolic acidosis; Microcephaly; Nephrocalcinosis; Nephropathy; Renal tubular acidosis; Right ventricular hypertrophy; Sloping forehead; Talipes calcaneovalgus; Ventricular septal defectPalmoplantar keratoderma plus congenital ichthyosis
VPS33B15q26.1100%gene with protein product608552Arthrogryposis multiplex congenita; Atrial septal defect; Autosomal recessive inheritance; Cholestatic liver disease; Conjugated hyperbilirubinemia; Death in infancy; Dehydration; Elevated hepatic transaminases; Failure to thrive; Generalized hypotonia; Giant cell hepatitis; Global developmental delay; Hip dysplasia; Ichthyosis; Jaundice; Low-set ears; Metabolic acidosis; Microcephaly; Micrognathia; Nephrocalcinosis; Nephropathy; Renal tubular acidosis; Right ventricular hypertrophy; Sloping forehead; Talipes calcaneovalgus; Ventricular septal defectPalmoplantar keratoderma plus congenital ichthyosis


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome