XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

ENTER GENES BELOW AND CLICK "ADD GENES TO SLICE"

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OR

SEARCH BY GENE SYMBOL OR PHENOTYPE (HPO TERM)

You may also use this search to review average exome sequencing coverage by entering the gene symbol below.

SELECTED GENES FOR YOUR SLICE

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Phenotypes
Holoprosencephaly

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
CDON11q24.299.99%gene with protein product608707Agenesis of corpus callosum; Autosomal dominant inheritance; Cleft lip; Cleft palate; Delayed puberty; Ectopic posterior pituitary; Failure to thrive; Global developmental delay; Holoprosencephaly; Hypoglycemia; Hypoplasia of penis; Hypotelorism; Hypothyroidism; Microcephaly; Polysplenia; Proptosis; Short stature; Sporadic; Synophrys; Thick eyebrow; Variable expressivity
DHCR711q13.4100%gene with protein product602858SLOS2-3 toe syndactyly; Abnormal dermatoglyphics; Abnormal lung lobation; Abnormality of dental morphology; Abnormality of the larynx; Abnormality of the metacarpal bones; Aganglionic megacolon; Aggressive behavior; Ambiguous genitalia; Anteverted nares; Aplasia/Hypoplasia of the cerebellum; Atrial septal defect; Atrioventricular canal defect; Attention deficit hyperactivity disorder; Autism; Autosomal recessive inheritance; Bicornuate uterus; Bifid scrotum; Biparietal narrowing; Breech presentation; Broad alveolar ridges; Cataract; Cholestatic liver disease; Cleft palate; Clitoral hypertrophy; Coarctation of aorta; Constipation; Cryptorchidism; Cutaneous photosensitivity; Cutis marmorata; Dandy-Walker malformation; Decreased fetal movement; Dental crowding; Depressed nasal bridge; Eczema; Elevated 7-dehydrocholesterol; Epicanthus; Epiphyseal stippling; Excessive daytime somnolence; Facial capillary hemangioma; Failure to thrive; Feeding difficulties in infancy; Gastroesophageal reflux; Gastrointestinal dysmotility; Generalized hypotonia; Gingival overgrowth; Global developmental delay; Hammertoe; Hearing impairment; Hip dislocation; Hip subluxation; Holoprosencephaly; Hydrocephalus; Hydronephrosis; Hyperactivity; Hypertelorism; Hypertonia; Hypocholesterolemia; Hypoplasia of penis; Hypoplasia of the corpus callosum; Hypoplasia of the frontal lobes; Hypospadias; Increased nuchal translucency; Intellectual disability; Intestinal malrotation; Intrauterine growth retardation; Long philtrum; Low-set ears; Low-set, posteriorly rotated ears; Metatarsus adductus; Microcephaly; Microglossia; Micrognathia; Micromelia; Micropenis; Muscular hypotonia; Narrow forehead; Nystagmus; Overlapping toe; Patent ductus arteriosus; Periventricular gray matter heterotopia; Polyhydramnios; Poor suck; Postaxial foot polydactyly; Postaxial hand polydactyly; Posteriorly rotated ears; Precocious puberty; Premature birth; Proximal placement of thumb; Ptosis; Pulmonary hypoplasia; Pyloric stenosis; Recurrent infections; Recurrent otitis media; Renal agenesis; Renal cyst; Renal hypoplasia; Scrotal hypoplasia; Seizures; Self-injurious behavior; Self-mutilation; Septate vagina; Severe photosensitivity; Short neck; Short stature; Short thumb; Short toe; Sleep-wake cycle disturbance; Strabismus; Talipes calcaneovalgus; Tracheal stenosis; Ureteropelvic junction obstruction; Ventricular septal defect; Ventriculomegaly; Vomiting; Wide intermamillary distance; Wide mouth; Wide nasal bridgeDisorders of Sex Development
GLI22q14.299.99%gene with protein product165230Abnormal cortical gyration; Abnormal prolactin level; Abnormality of secondary sexual hair; Agenesis of incisor; Amenorrhea; Anophthalmia; Anterior pituitary agenesis; Anterior pituitary hypoplasia; Aplasia/Hypoplasia of the breasts; Autosomal dominant inheritance; Bilateral cleft lip and palate; Cryptorchidism; Decreased circulating ACTH level; Decreased testicular size; Dental malocclusion; Depressed nasal bridge; Depressed nasal ridge; Ectopic posterior pituitary; Fatigue; Global developmental delay; Growth hormone deficiency; Holoprosencephaly; Hydrocephalus; Hypoglycemia; Hypogonadotrophic hypogonadism; Hypopituitarism; Hypoplasia of the maxilla; Hypoplasia of the premaxilla; Hypotelorism; Hypotension; Incomplete penetrance; Infertility; Macrotia; Malar flattening; Microcephaly; Micropenis; Microphthalmia; Midface retrusion; Optic nerve hypoplasia; Osteopenia; Panhypopituitarism; Partial agenesis of the corpus callosum; Pituitary hypothyroidism; Postaxial hand polydactyly; Prominent antihelix; Seizures; Short hard palate; Short philtrum; Short stature; Single median maxillary incisor; Single naris; Sporadic; Underdeveloped tragus; Variable expressivity
GLI37p14.1100%gene with protein product165240GCPS, PHS1-5 toe syndactyly; 3-4 finger cutaneous syndactyly; 3-4 finger syndactyly; Abnormal basal ganglia MRI signal intensity; Abnormal lung lobation; Abnormal prolactin level; Abnormality of earlobe; Accelerated skeletal maturation; Accessory oral frenulum; Adrenocorticotropic hormone deficiency; Anal atresia; Anteverted nares; Aplasia/Hypoplasia of the corpus callosum; Atresia of the external auditory canal; Autosomal dominant inheritance; Bifid epiglottis; Bifid uvula; Bilateral postaxial polydactyly; Brachydactyly; Broad hallux phalanx; Broad thumb; Central adrenal insufficiency; Cryptorchidism; Dandy-Walker malformation; Decreased circulating cortisol level; Decreased testicular size; Depressed nasal ridge; Distal shortening of limbs; Distal urethral duplication; Downslanted palpebral fissures; Dysplastic distal thumb phalanges with a central hole; Ectopic kidney; Esophageal atresia; Finger syndactyly; Frontal bossing; Gonadotropin deficiency; Growth hormone deficiency; Hemivertebrae; High forehead; Hip dislocation; Holoprosencephaly; Hydronephrosis; Hydroureter; Hypertelorism; Hypoplasia of the epiglottis; Hypothalamic hamartoma; Intellectual disability, severe; Intrauterine growth retardation; Laryngeal cleft; Low-set, posteriorly rotated ears; Macrocephaly; Mesoaxial foot polydactyly; Mesoaxial hand polydactyly; Micropenis; Microphthalmia; Microtia; Nail dysplasia; Natal tooth; Neonatal death; Panhypopituitarism; Pituitary hypothyroidism; Polydactyly affecting the 3rd finger; Polydactyly affecting the 4th finger; Postaxial foot polydactyly; Postaxial hand polydactyly; Preaxial foot polydactyly; Preaxial polydactyly; Precocious puberty; Preductal coarctation of the aorta; Prominent occiput; Ptosis; Radial bowing; Radial head subluxation; Recurrent upper and lower respiratory tract infections; Renal cyst; Renal dysplasia; Renal hypoplasia; Rib fusion; Scaphocephaly; Secondary growth hormone deficiency; Seizures; Short 4th metacarpal; Short nose; Short stature; Skeletal dysplasia; Sloping forehead; Supernumerary metacarpal bones; Telecanthus; Thyroid dysgenesis; Toe syndactyly; Tracheoesophageal fistula; Trigonocephaly; Triphalangeal thumb; Variable expressivity; Ventricular septal defect; Wide nasal bridgeVACTERL Association
ICK6p12.1100%gene with protein product612325Abnormality of the pinna; Adrenal hypoplasia; Ambiguous genitalia; Aplasia/Hypoplasia of the corpus callosum; Autosomal recessive inheritance; Barrel-shaped chest; Brachydactyly; Cleft palate; Cleft upper lip; Cryptorchidism; Depressed nasal tip; Holoprosencephaly; Hydrocephalus; Hypospadias; Low-set ears; Malar flattening; Micrognathia; Micromelia; Micropenis; Microphallus; Midface retrusion; Postaxial polydactyly; Sandal gap; Scrotal hypoplasia; Shield chest; Syndactyly; Ulnar deviation of the hand; Ventriculomegaly; Wide intermamillary distance; Wide nasal bridgeDisorders of Sex Development
OTX214q22.3100%gene with protein product600037Abnormal prolactin level; Abnormality of secondary sexual hair; Abnormality of the cranial nerves; Absent nares; Agenesis of corpus callosum; Amenorrhea; Anterior pituitary agenesis; Anterior pituitary hypoplasia; Aplasia/Hypoplasia involving the nose; Aplasia/Hypoplasia of the breasts; Aplasia/Hypoplasia of the cerebellum; Aplasia/Hypoplasia of the eyebrow; Autosomal dominant inheritance; Cataract; Cleft palate; Coloboma; Cryptorchidism; Cyclopia; Decreased circulating ACTH level; Decreased testicular size; Depressed nasal ridge; Ectopic posterior pituitary; Fatigue; Generalized hypotonia; Global developmental delay; Hemiplegia/hemiparesis; Holoprosencephaly; Hypoglycemia; Hypogonadotrophic hypogonadism; Hypoplasia of penis; Hypotension; Infertility; Joint laxity; Low-set, posteriorly rotated ears; Mandibular aplasia; Microcornea; Microglossia; Microphthalmia; Narrow internal auditory canal; Narrow mouth; Nystagmus; Osteopenia; Pituitary hypothyroidism; Polyhydramnios; Respiratory distress; Retinal dystrophy; Seizures; Septo-optic dysplasia; Short stature; Situs inversus totalis; Strabismus; Synotia; Visual impairmentHeterotaxy
PRRX11q24.2100%gene with protein product167420PMX1Abnormality of the cranial nerves; Abnormality of the eye; Absent nares; Agenesis of corpus callosum; Aglossia; Aplasia/Hypoplasia involving the nose; Aplasia/Hypoplasia of the cerebellum; Aplasia/Hypoplasia of the eyebrow; Autosomal dominant inheritance; Autosomal recessive inheritance; Cleft palate; Conductive hearing impairment; Cyclopia; Downslanted palpebral fissures; Holoprosencephaly; Hypoplasia of penis; Hypoplasia of the epiglottis; Laryngeal hypoplasia; Low-set, posteriorly rotated ears; Mandibular aplasia; Microglossia; Micrognathia; Narrow internal auditory canal; Narrow mouth; Phenotypic variability; Polyhydramnios; Respiratory distress; Situs inversus totalis; Synotia; TracheomalaciaHeterotaxy
PRRX11q24.2100%gene with protein product167420PMX1Abnormality of the cranial nerves; Abnormality of the eye; Absent nares; Agenesis of corpus callosum; Aglossia; Aplasia/Hypoplasia involving the nose; Aplasia/Hypoplasia of the cerebellum; Aplasia/Hypoplasia of the eyebrow; Autosomal dominant inheritance; Autosomal recessive inheritance; Cleft palate; Conductive hearing impairment; Cyclopia; Downslanted palpebral fissures; Holoprosencephaly; Hypoplasia of penis; Hypoplasia of the epiglottis; Laryngeal hypoplasia; Low-set, posteriorly rotated ears; Mandibular aplasia; Microglossia; Micrognathia; Narrow internal auditory canal; Narrow mouth; Phenotypic variability; Polyhydramnios; Respiratory distress; Situs inversus totalis; Synotia; TracheomalaciaHeterotaxy
SHH7q36.399.9%gene with protein product600725HPE3, HLP31-5 finger syndactyly; 6 metacarpals; Abnormality of the nose; Abnormality of vision; Autosomal dominant inheritance; Bilateral microphthalmos; Bowing of the long bones; Camptodactyly of finger; Choanal atresia; Chorioretinal coloboma; Clinodactyly of the 5th finger; Cyclopia; Fibular duplication; Finger syndactyly; Foot polydactyly; Hand polydactyly; Holoprosencephaly; Hydronephrosis; Hypotelorism; Incomplete penetrance; Increased fibular diameter; Intellectual disability; Intrauterine growth retardation; Iris coloboma; Malar flattening; Microcephaly; Microphthalmia; Midface retrusion; Midnasal stenosis; Narrow nasal bridge; Postaxial hand polydactyly; Preaxial hand polydactyly; Premature birth; Proboscis; Schizencephaly; Short philtrum; Short stature; Short tibia; Single median maxillary incisor; Tented upper lip vermilion; Toe syndactyly; Torus palatinus; Variable expressivity
SHH7q36.399.9%gene with protein product600725HPE3, HLP31-5 finger syndactyly; 6 metacarpals; Abnormality of the nose; Abnormality of vision; Autosomal dominant inheritance; Bilateral microphthalmos; Bowing of the long bones; Camptodactyly of finger; Choanal atresia; Chorioretinal coloboma; Clinodactyly of the 5th finger; Cyclopia; Fibular duplication; Finger syndactyly; Foot polydactyly; Hand polydactyly; Holoprosencephaly; Hydronephrosis; Hypotelorism; Incomplete penetrance; Increased fibular diameter; Intellectual disability; Intrauterine growth retardation; Iris coloboma; Malar flattening; Microcephaly; Microphthalmia; Midface retrusion; Midnasal stenosis; Narrow nasal bridge; Postaxial hand polydactyly; Preaxial hand polydactyly; Premature birth; Proboscis; Schizencephaly; Short philtrum; Short stature; Short tibia; Single median maxillary incisor; Tented upper lip vermilion; Toe syndactyly; Torus palatinus; Variable expressivity
SIX32p21100%gene with protein product603714HPE2Absent nasal septal cartilage; Adrenal hypoplasia; Agenesis of corpus callosum; Anterior pituitary agenesis; Aplasia of the nose; Autosomal dominant inheritance; Bifid uvula; Cerebellar hypoplasia; Constipation; Cyclopia; Diabetes insipidus; Generalized hypotonia; Global developmental delay; Heterogeneous; Holoprosencephaly; Hypotelorism; Incomplete penetrance; Intellectual disability; Malar flattening; Median cleft lip and palate; Microcephaly; Microphthalmia; Midface retrusion; Schizencephaly; Scoliosis; Seizures; Single median maxillary incisor; Sporadic; Submucous cleft hard palate; Variable expressivity
ZIC213q32.397.73%gene with protein product603073Abnormal facial shape; Autosomal dominant inheritance; Global developmental delay; Holoprosencephaly; Hydrocephalus; Intellectual disability; Microcephaly; Synophrys; Trigonocephaly


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome