XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

ENTER GENES BELOW AND CLICK "ADD GENES TO SLICE"

If cutting and pasting from another document, please be sure to list EITHER one gene symbol per line OR enter a comma-separated list.


OR

SEARCH BY GENE SYMBOL OR PHENOTYPE (HPO TERM)

You may also use this search to review average exome sequencing coverage by entering the gene symbol below.

SELECTED GENES FOR YOUR SLICE

What do you want to do?

Place an e-order of this Slice on a specific patient through the GeneDx Portal  
Obtain a Slice ID to order testing with a printed requisition form  
Only email the gene list to myself and/or others at this time  


 
Phenotypes
Cortical dysplasia

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
ARHGAP313q13.32-q13.100%gene with protein product610911Abnormal pulmonary valve morphology; Abnormality of the metacarpal bones; Absent hand; Absent toe; Alopecia; Aortic valve stenosis; Aplasia cutis congenita; Aplasia cutis congenita on trunk or limbs; Aplasia cutis congenita over posterior parietal area; Atrial septal defect; Autosomal dominant inheritance; Bicuspid aortic valve; Brachydactyly; Calvarial skull defect; Cataract; Cleft palate; Cleft upper lip; Cortical dysplasia; Cutis marmorata; Encephalocele; Esotropia; Failure to thrive; Finger syndactyly; Generalized hypotonia; Global developmental delay; Hydrocephalus; Hypoplasia of the corpus callosum; Hypoplastic left heart; Imperforate hymen; Intellectual disability; Microcephaly; Microphthalmia; Pachygyria; Periventricular leukomalacia; Phenotypic variability; Polymicrogyria; Pulmonary arterial hypertension; Pulmonary artery atresia; Pulmonary artery stenosis; Pulmonic stenosis; Seizures; Short distal phalanx of finger; Small nail; Sparse hair; Split hand; Strabismus; Supernumerary nipple; Talipes; Talipes equinovarus; Tetralogy of Fallot; Toe syndactyly; Ventricular septal defect; Ventriculomegaly
ASNS7q21.3100%gene with protein product108370Autosomal recessive inheritance; Cerebellar hypoplasia; Cortical dysplasia; Cortical gyral simplification; Cortical visual impairment; Delayed myelination; Encephalopathy; Exaggerated startle response; Failure to thrive; Feeding difficulties; Global developmental delay; Hyperreflexia; Hypoplasia of the corpus callosum; Hypoplasia of the pons; Hypsarrhythmia; Large hands; Long foot; Macrotia; Microcephaly; Micrognathia; Muscular hypotonia of the trunk; Profound global developmental delay; Progressive; Progressive microcephaly; Respiratory insufficiency; Seizures; Sloping forehead; Spastic tetraplegia; Ventriculomegaly
B4GAT111q13.2100%gene with protein productFormer name = B3GNT1605517B3GNT6, B3GNT1Abnormal aldolase level; Abnormal lactate dehydrogenase activity; Abnormal levels of creatine kinase in blood; Absent septum pellucidum; Agenesis of corpus callosum; Anencephaly; Anophthalmia; Aplasia/Hypoplasia involving the skeletal musculature; Areflexia; Autosomal recessive inheritance; Blindness; Cerebellar hypoplasia; Chorioretinal dysplasia; Congenital onset; Corneal opacity; Cortical dysplasia; Cryptorchidism; Dandy-Walker malformation; Elevated serum creatine phosphokinase; Glaucoma; Global developmental delay; Hydrocephalus; Hydronephrosis; Hypoplasia of penis; Hypoplasia of the brainstem; Hyporeflexia; Intellectual disability; Lissencephaly; Macrocephaly; Macrogyria; Metatarsus valgus; Micropenis; Microphthalmia; Muscle weakness; Muscular dystrophy; Muscular hypotonia; Occipital encephalocele; Opacification of the corneal stroma; Optic atrophy; Optic nerve dysplasia; Pachygyria; Polymicrogyria; Retinal detachment; Retinal dysplasia; Retinal dystrophy; Seizures; Severe muscular hypotonia; Skeletal muscle atrophy; Spasticity; Specific learning disability; Type II lissencephalyMuscular dystropy-dystroglycanopathy (Walker-Warburg); Rhabdomyolysis
CNTNAP27q35-q36.1100%gene with protein product604569Cortical dysplasia; Delayed gross motor development; Hyperactivity; Impaired social interactions; Intellectual disability; Progressive language deterioration; Reduced tendon reflexes; Seizures
FGFR18p11.23100%gene with protein product136350FLT2, KAL22-3 toe syndactyly; Abnormal anterior chamber morphology; Abnormal form of the vertebral bodies; Abnormal morphology of the nasolacrimal system; Abnormality of body height; Abnormality of cardiovascular system morphology; Abnormality of the clavicle; Abnormality of the eyelashes; Abnormality of the nasopharynx; Abnormality of the voice; Absence of pubertal development; Absence of secondary sex characteristics; Absent septum pellucidum; Agenesis of corpus callosum; Alopecia; Anosmia; Anterior hypopituitarism; Anterior pituitary hypoplasia; Anteverted nares; Anxiety; Aphasia; Aplasia/Hypoplasia of the corpus callosum; Aplasia/Hypoplasia of the radius; Aplasia/Hypoplasia of the thumb; Arachnoid cyst; Arnold-Chiari malformation; Atrial septal defect; Autosomal dominant inheritance; Bicoronal synostosis; Bimanual synkinesia; Bone cyst; Bowing of the long bones; Brachycephaly; Brachyturricephaly; Breast hypoplasia; Broad foot; Broad hallux; Broad hallux phalanx; Broad metacarpals; Broad metatarsal; Broad palm; Broad phalanx; Broad thumb; Bronchomalacia; Calcaneonavicular fusion; Capillary hemangiomas; Cartilaginous trachea; Cerebellar hypoplasia; Cerebral calcification; Cerebral cortical atrophy; Choanal atresia; Choanal stenosis; Chordee; Cleft palate; Cleft upper lip; Cloverleaf skull; Corneal opacity; Coronal craniosynostosis; Cortical dysplasia; Craniofacial hyperostosis; Craniosynostosis; Cryptorchidism; Dandy-Walker malformation; Decreased fertility; Decreased testicular size; Decreased testosterone in males; Delayed puberty; Delayed skeletal maturation; Delayed speech and language development; Dental crowding; Depressed nasal bridge; Depressivity; Diabetes insipidus; Downslanted palpebral fissures; Dysphasia; Echolalia; Ectrodactyly; Elbow ankylosis; Encephalocele; Epibulbar dermoid; Epicanthus; Erectile abnormalities; Eunuchoid habitus; Eyelid coloboma; Failure to thrive; Failure to thrive in infancy; Female hypogonadism; Finger syndactyly; Frontal bossing; Global developmental delay; Gonadotropin deficiency; Gynecomastia; Hallux varus; Hemiplegia/hemiparesis; Heterogeneous; High forehead; High palate; Humeroradial synostosis; Hydrocephalus; Hydronephrosis; Hypernatremia; Hypertelorism; Hypogonadotrophic hypogonadism; Hypoplasia of penis; Hypoplasia of the corpus callosum; Hypoplasia of the frontal bone; Hypoplasia of the iris; Hypoplasia of the maxilla; Hypoplasia of the ovary; Hypoplasia of the uterus; Hypoplastic scapulae; Hypoplastic toenails; Hyposmia; Hypospadias; Hypotelorism; Hypothalamic gonadotropin-releasing hormone deficiency; Impotence; Incomplete penetrance; Increased female libido; Increased susceptibility to fractures; Inguinal hernia; Intellectual disability; Intrauterine growth retardation; Iris coloboma; Limb undergrowth; Linear hyperpigmentation; Lipodystrophy; Lipoma; Lipomas of the central neryous system; Lobar holoprosencephaly; Long penis; Long philtrum; Low-set ears; Low-set, posteriorly rotated ears; Lumbar hemivertebrae; Macrocephaly; Malar flattening; Male hypogonadism; Mandibular prognathia; Meckel diverticulum; Microcephaly; Microdontia; Micrognathia; Micropenis; Microphthalmia; Midface retrusion; Multiple lipomas; Multiple unerupted teeth; Muscle stiffness; Mutism; Nasal obstruction; Neonatal hypotonia; Neoplasm of the skeletal system; Nevus flammeus; Non-midline cleft lip; Non-obstructive azoospermia; Nystagmus; Oligodontia; Omphalocele; Osteolysis; Osteopenia; Osteoporosis; Pelvic kidney; Peripheral pulmonary artery stenosis; Platyspondyly; Posteriorly rotated ears; Preauricular skin tag; Primary amenorrhea; Prominent supraorbital ridges; Proptosis; Protruding ear; Pseudoarthrosis; Ptosis; Pulmonary arterial hypertension; Reduced bone mineral density; Reduced number of teeth; Respiratory distress; Respiratory insufficiency; Retinopathy; Rhizomelia; Rigidity; Sclerocornea; Secondary amenorrhea; Seizures; Sensorineural hearing impairment; Septo-optic dysplasia; Severe short stature; Shallow orbits; Short foot; Short hallux; Short metacarpal; Short metatarsal; Short middle phalanx of toe; Short neck; Short nose; Short palm; Short phalanx of finger; Short stature; Shortening of all middle phalanges of the fingers; Somatic mosaicism; Sparse body hair; Spasticity; Split hand; Sporadic; Strabismus; Subcortical cerebral atrophy; Subcutaneous lipoma; Subcutaneous nodule; Subvalvular aortic stenosis; Syndactyly; Synophrys; Telecanthus; Toe syndactyly; Tricuspid valve prolapse; Trigonocephaly; Unerupted tooth; Ventricular septal defect; Ventriculomegaly; Visceral angiomatosis; Visual impairment; Wide intermamillary distance; Wide nasal bridge; Wide nose; XanthomatosisDisorders of Sex Development
HSD17B45q23.199.97%gene with protein product601860Abnormal facial shape; Aplasia/Hypoplasia of the cerebellum; Autosomal recessive inheritance; Bile duct proliferation; Calcific stippling; Cerebral dysmyelination; Cholestasis; Corpus callosum atrophy; Cortical dysplasia; Decreased muscle mass; Delayed cranial suture closure; Delayed skeletal maturation; Depressed nasal bridge; Elevated hepatic transaminases; Epicanthus; Failure to thrive; Feeding difficulties in infancy; Fetal ascites; Frontal bossing; Gait ataxia; Generalized cerebral atrophy/hypoplasia; Gliosis; Global developmental delay; Gonadal dysgenesis; Hammertoe; Hepatic steatosis; Hepatomegaly; High forehead; High palate; Hypertelorism; Hypoplasia of the corpus callosum; Increased circulating gonadotropin level; Infantile onset; Large fontanelles; Limited extraocular movements; Long philtrum; Low-set ears; Macrocephaly; Micrognathia; Neonatal hypotonia; Nystagmus; Osteopenia; Osteoporosis; Pectus excavatum; Pes cavus; Phenotypic variability; Polyhydramnios; Polymicrogyria; Primary adrenal insufficiency; Primary amenorrhea; Renal cyst; Retrognathia; Scaphocephaly; Scoliosis; Seizures; Sensorineural hearing impairment; Short stature; Split hand; Strabismus; Talipes equinovarus; Thoracic hypoplasia; Undetectable electroretinogram; Upslanted palpebral fissure; Ventriculomegaly; Visual impairment; Visual loss
KIF2A5q12.199.89%gene with protein product602591KIF2Autosomal dominant inheritance; Cortical dysplasia; Global developmental delay; Hypoplasia of the corpus callosum; Lissencephaly; Microcephaly; Pachygyria; Seizures; Spastic tetraplegia
KIF5C2q23.1-q23.210.14%gene with protein product604593Absent speech; Arthrogryposis multiplex congenita; Autosomal dominant inheritance; Congenital onset; Cortical dysplasia; Fetal akinesia sequence; Global developmental delay; Hypoplasia of the corpus callosum; Intrauterine growth retardation; Microcephaly; Polymicrogyria; Seizures; Spastic tetraplegia; Variable expressivity
MTOR1p36.22100%gene with protein product601231FRAP, FRAP2, FRAP1Adult onset; Astrocytosis; Autosomal dominant inheritance; Cafe-au-lait spot; Cognitive impairment; Cortical dysplasia; Curly hair; Deep palmar crease; Deep plantar creases; Depressed nasal bridge; Downslanted palpebral fissures; Focal seizures with impairment of consciousness or awareness; Focal white matter lesions; Frontal bossing; Generalized hypotonia; Hemiparesis; High forehead; Hypertelorism; Hypoglycemia; IgA deficiency; Infantile onset; Intellectual disability; Long philtrum; Macrocephaly; Midface retrusion; Perisylvian polymicrogyria; Rhizomelia; Seizures; Short chin; Short nose; Short proximal phalanx of finger; Smooth philtrum; Somatic mutation; Sporadic; Thin upper lip vermilion; Thrombocytopenia; Wide anterior fontanel; Wide mouthAplastic Anemia ; Bone Marrow Failure Syndromes
SNAP2922q11.21100%gene with protein product604202Abnormality of eye movement; Abnormality of peripheral nerve conduction; Abnormality of the corpus callosum; Areflexia; Ataxia; Autosomal recessive inheritance; Cortical dysplasia; Depressed nasal bridge; Diffuse palmoplantar keratoderma; Downslanted palpebral fissures; Failure to thrive; Global developmental delay; Hypertelorism; Ichthyosis; Infantile onset; Intellectual disability; Intellectual disability, progressive; Intellectual disability, severe; Long face; Microcephaly; Muscular hypotonia; Optic atrophy; Optic disc hypoplasia; Pachygyria; Palmoplantar keratoderma; Peripheral neuropathy; Polymicrogyria; Polyneuropathy; Poor head control; Progressive microcephaly; Prominent nasal bridge; Sensorineural hearing impairment; Wide nasal bridgePalmoplantar keratoderma plus congenital ichthyosis
TSC19q34100%gene with protein product605284TSCAbdominal pain; Abnormality of female internal genitalia; Abnormality of the respiratory system; Achromatic retinal patches; Adenoma sebaceum; Adult onset; Angiofibromas; Astrocytoma; Astrocytosis; Atelectasis; Attention deficit hyperactivity disorder; Autism; Autosomal dominant inheritance; Behavioral abnormality; Cafe-au-lait spot; Cardiac rhabdomyoma; Cerebral calcification; Chest pain; Chordoma; Chylothorax; Cognitive impairment; Confetti-like hypopigmented macules; Cortical dysplasia; Cortical tubers; Cough; Dental enamel pits; Dyspnea; EEG abnormality; Emphysema; Ependymoma; Focal seizures with impairment of consciousness or awareness; Focal white matter lesions; Gingival fibromatosis; Global developmental delay; Hematuria; Hemiparesis; Heterogeneous; Hypomelanotic macule; Hypopigmented skin patches; Hypothyroidism; Infantile onset; Infantile spasms; Intellectual disability; Lymphadenopathy; Multiple cafe-au-lait spots; Nevus flammeus; Optic atrophy; Optic nerve glioma; Papule; Phenotypic variability; Pneumothorax; Precocious puberty; Premature chromatid separation; Projection of scalp hair onto lateral cheek; Prominent occiput; Pulmonary infiltrates; Pulmonary lymphangiomyomatosis; Renal angiomyolipoma; Renal cell carcinoma; Renal cyst; Restrictive ventilatory defect; Retinal hamartoma; Seizures; Shagreen patch; Skin tags; Somatic mutation; Specific learning disability; Sporadic; Subcutaneous nodule; Subependymal giant-cell astrocytoma; Subependymal nodules; Subungual fibromas; Ungual fibroma; Wolff-Parkinson-White syndrome
TSC19q34100%gene with protein product605284TSCAbdominal pain; Abnormality of female internal genitalia; Abnormality of the respiratory system; Achromatic retinal patches; Adenoma sebaceum; Adult onset; Angiofibromas; Astrocytoma; Astrocytosis; Atelectasis; Attention deficit hyperactivity disorder; Autism; Autosomal dominant inheritance; Behavioral abnormality; Cafe-au-lait spot; Cardiac rhabdomyoma; Cerebral calcification; Chest pain; Chordoma; Chylothorax; Cognitive impairment; Confetti-like hypopigmented macules; Cortical dysplasia; Cortical tubers; Cough; Dental enamel pits; Dyspnea; EEG abnormality; Emphysema; Ependymoma; Focal seizures with impairment of consciousness or awareness; Focal white matter lesions; Gingival fibromatosis; Global developmental delay; Hematuria; Hemiparesis; Heterogeneous; Hypomelanotic macule; Hypopigmented skin patches; Hypothyroidism; Infantile onset; Infantile spasms; Intellectual disability; Lymphadenopathy; Multiple cafe-au-lait spots; Nevus flammeus; Optic atrophy; Optic nerve glioma; Papule; Phenotypic variability; Pneumothorax; Precocious puberty; Premature chromatid separation; Projection of scalp hair onto lateral cheek; Prominent occiput; Pulmonary infiltrates; Pulmonary lymphangiomyomatosis; Renal angiomyolipoma; Renal cell carcinoma; Renal cyst; Restrictive ventilatory defect; Retinal hamartoma; Seizures; Shagreen patch; Skin tags; Somatic mutation; Specific learning disability; Sporadic; Subcutaneous nodule; Subependymal giant-cell astrocytoma; Subependymal nodules; Subungual fibromas; Ungual fibroma; Wolff-Parkinson-White syndrome
TSC216p13.3100%gene with protein product191092TSC4Abdominal pain; Abnormality of female internal genitalia; Achromatic retinal patches; Adenoma sebaceum; Adult onset; Angiofibromas; Astrocytoma; Astrocytosis; Atelectasis; Attention deficit hyperactivity disorder; Autism; Autosomal dominant inheritance; Behavioral abnormality; Cafe-au-lait spot; Cardiac rhabdomyoma; Cerebral calcification; Chest pain; Chordoma; Chylothorax; Cognitive impairment; Confetti-like hypopigmented macules; Cortical dysplasia; Cortical tubers; Cough; Dyspnea; EEG abnormality; Emphysema; Ependymoma; Focal seizures with impairment of consciousness or awareness; Focal white matter lesions; Gingival fibromatosis; Global developmental delay; Hematuria; Hemiparesis; Heterogeneous; Hypopigmented skin patches; Hypothyroidism; Infantile onset; Infantile spasms; Intellectual disability; Lymphadenopathy; Multiple cafe-au-lait spots; Nevus flammeus; Optic atrophy; Optic nerve glioma; Papule; Phenotypic variability; Pneumothorax; Precocious puberty; Prominent occiput; Pulmonary infiltrates; Pulmonary lymphangiomyomatosis; Renal angiomyolipoma; Renal cell carcinoma; Renal cyst; Restrictive ventilatory defect; Retinal hamartoma; Seizures; Shagreen patch; Skin tags; Somatic mutation; Specific learning disability; Sporadic; Subcutaneous nodule; Subependymal giant-cell astrocytoma; Subependymal nodules; Subungual fibromas; Ungual fibroma; Wolff-Parkinson-White syndrome
TSC216p13.3100%gene with protein product191092TSC4Abdominal pain; Abnormality of female internal genitalia; Achromatic retinal patches; Adenoma sebaceum; Adult onset; Angiofibromas; Astrocytoma; Astrocytosis; Atelectasis; Attention deficit hyperactivity disorder; Autism; Autosomal dominant inheritance; Behavioral abnormality; Cafe-au-lait spot; Cardiac rhabdomyoma; Cerebral calcification; Chest pain; Chordoma; Chylothorax; Cognitive impairment; Confetti-like hypopigmented macules; Cortical dysplasia; Cortical tubers; Cough; Dyspnea; EEG abnormality; Emphysema; Ependymoma; Focal seizures with impairment of consciousness or awareness; Focal white matter lesions; Gingival fibromatosis; Global developmental delay; Hematuria; Hemiparesis; Heterogeneous; Hypopigmented skin patches; Hypothyroidism; Infantile onset; Infantile spasms; Intellectual disability; Lymphadenopathy; Multiple cafe-au-lait spots; Nevus flammeus; Optic atrophy; Optic nerve glioma; Papule; Phenotypic variability; Pneumothorax; Precocious puberty; Prominent occiput; Pulmonary infiltrates; Pulmonary lymphangiomyomatosis; Renal angiomyolipoma; Renal cell carcinoma; Renal cyst; Restrictive ventilatory defect; Retinal hamartoma; Seizures; Shagreen patch; Skin tags; Somatic mutation; Specific learning disability; Sporadic; Subcutaneous nodule; Subependymal giant-cell astrocytoma; Subependymal nodules; Subungual fibromas; Ungual fibroma; Wolff-Parkinson-White syndrome
TUBB2A6p25.291.91%gene with protein product615101TUBB, TUBB2Autosomal dominant inheritance; Cortical dysplasia; Generalized hypotonia; Global developmental delay; Hypoplasia of the corpus callosum; Seizures; Variable expressivity
TUBB316q24.3100%gene with protein product602661FEOM3Agenesis of corpus callosum; Amblyopia; Autosomal dominant inheritance; Compensatory chin elevation; Congenital fibrosis of extraocular muscles; Congenital onset; Cortical dysplasia; Exotropia; Global developmental delay; Hypoplasia of the brainstem; Hypoplasia of the corpus callosum; Intellectual disability, moderate; Levator palpebrae superioris atrophy; Lissencephaly; Microcephaly; Muscular hypotonia of the trunk; Nonprogressive restrictive external ophthalmoplegia; Nystagmus; Phenotypic variability; Polymicrogyria; Ptosis; Spasticity; Strabismus; Superior rectus atrophy; Variable expressivity
TUBG117q21.31100%gene with protein product191135TUBGAutosomal dominant inheritance; Cortical dysplasia; Global developmental delay; Microcephaly; Seizures; Variable expressivity


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome