XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

ENTER GENES BELOW AND CLICK "ADD GENES TO SLICE"

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You may also use this search to review average exome sequencing coverage by entering the gene symbol below.

SELECTED GENES FOR YOUR SLICE

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Phenotypes
Cholelithiasis

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
ABCB112q31.1100%gene with protein product603201BSEP, PFIC2Autosomal recessive inheritance; Cholelithiasis; Cirrhosis; Conjugated hyperbilirubinemia; Death in childhood; Diarrhea; Elevated alkaline phosphatase; Failure to thrive; Fat malabsorption; Hepatocellular carcinoma; Hepatomegaly; Infantile onset; Intermittent jaundice; Intrahepatic cholestasis; Jaundice; Pruritus; Short stature; Splenomegaly
ABCB47q21.12100%gene with protein product171060PGY3, MDR3Abnormal liver function tests during pregnancy; Autosomal dominant inheritance; Autosomal recessive inheritance; Bile duct proliferation; Cholangitis; Cholecystitis; Cholelithiasis; Cholesterol gallstones; Cirrhosis; Diarrhea; Elevated alkaline phosphatase; Elevated hepatic transaminases; Fetal distress; Hepatic fibrosis; Hepatomegaly; Heterogeneous; Increased serum bile acid concentration during pregnancy; Infantile onset; Intrahepatic cholestasis; Jaundice; Malabsorption; Pancreatitis; Portal fibrosis; Premature birth; Pruritus; Splenomegaly
AIRE21q22.399.93%gene with protein product607358APECEDAbnormality of calcium-phosphate metabolism; Abnormality of the cerebral vasculature; Abnormality of the fingernails; Adrenal hyperplasia; Alopecia; Anemia; Asplenia; Autoimmunity; Autosomal dominant inheritance; Autosomal recessive inheritance; Cataract; Cholelithiasis; Chronic active hepatitis; Chronic atrophic gastritis; Chronic mucocutaneous candidiasis; Constriction of peripheral visual field; Decreased circulating aldosterone level; Diabetes mellitus; Diarrhea; Female hypogonadism; Hypoparathyroidism; Hypoplasia of dental enamel; Increased circulating cortisol level; Juvenile onset; Keratoconjunctivitis; Malabsorption; Opacification of the corneal stroma; Photophobia; Pigmentary retinopathy; Reduced visual acuity; Type I diabetes mellitus; Visual impairment; VitiligoAutoimmune Disorders ; Primary Immunodeficiency
ALDOA16p11.2100%gene with protein product103850Autosomal recessive inheritance; Cholecystitis; Cholelithiasis; Delayed puberty; Epicanthus; Jaundice; Low posterior hairline; Nonspherocytic hemolytic anemia; Normochromic anemia; Normocytic anemia; Ptosis; Short neck; Short stature; SplenomegalyHemolytic Anemia ; Rhabdomyolysis
ANK18p11.21100%gene with protein product612641ANKAbnormality of the hypothalamus-pituitary axis; Autosomal dominant inheritance; Azoospermia; Cholelithiasis; Cryptorchidism; External ear malformation; Global developmental delay; Hemolytic anemia; High palate; Hyperbilirubinemia; Hypogonadotrophic hypogonadism; Hypoplasia of penis; Intellectual disability; Jaundice; Microcephaly; Micrognathia; Nystagmus; Preauricular pit; Reticulocytosis; Short stature; Spherocytosis; SplenomegalyHemolytic Anemia ; Nephrotic Syndrome
BLVRA7p13100%gene with protein product109750BLVRAutosomal dominant inheritance; Autosomal recessive inheritance; Cholelithiasis; Cholestasis; Decreased liver function
BPGM7q33100%gene with protein product613896Abnormality of metabolism/homeostasis; Autosomal recessive inheritance; Cholecystitis; Cholelithiasis; Jaundice; Nonspherocytic hemolytic anemia; Normochromic anemia; Normocytic anemia; Splenomegaly
CYP27A12q35100%gene with protein product606530CYP27Abnormal pyramidal signs; Abnormality of central somatosensory evoked potentials; Abnormality of cholesterol metabolism; Abnormality of extrapyramidal motor function; Abnormality of the dentate nucleus; Abnormality of the periventricular white matter; Abnormality of vision; Angina pectoris; Ataxia; Atherosclerosis; Autosomal recessive inheritance; Cataract; Cerebellar atrophy; Cerebral atrophy; Cholelithiasis; Delusions; Dementia; Depressivity; Developmental regression; Diarrhea; Dystonia; EEG with generalized slow activity; EMG: axonal abnormality; Hallucinations; Hypercholesterolemia; Hyperreflexia; Intellectual disability; Muscle weakness; Myocardial infarction; Myoclonus; Neurological speech impairment; Optic disc pallor; Osteoporosis; Peripheral neuropathy; Pseudobulbar paralysis; Respiratory insufficiency; Seizures; Spasticity; Tendon xanthomatosis; Tremor; Xanthelasma
DMPK19q13.32100%gene with protein productXomeDxSlice is not appropriate.605377DM1, DMAbnormal hair quantity; Abnormality of cardiovascular system morphology; Abnormality of the endocrine system; Autosomal dominant inheritance; Cataract; Cerebral atrophy; Cholelithiasis; Decreased fetal movement; Dysphagia; EMG abnormality; Excessive daytime sleepiness; Facial diplegia; Facial palsy; Feeding difficulties in infancy; First degree atrioventricular block; Frontal balding; Generalized hypotonia; Hypertonia; Hypogonadism; Intellectual disability, progressive; Intellectual disability, severe; Mask-like facies; Muscle weakness; Muscular hypotonia; Myotonia; Obsessive-compulsive trait; Polyhydramnios; Respiratory distress; Skeletal muscle atrophy; Testicular atrophy
FECH18q21.31100%gene with protein product612386Abnormality of the heme biosynthetic pathway; Autosomal dominant inheritance; Autosomal recessive inheritance; Childhood onset; Cholelithiasis; Cutaneous photosensitivity; Eczema; Edema; Erythema; Hemolytic anemia; Hepatic failure; Hypertriglyceridemia; Pruritus
GCGR17q25.3100%gene with protein product138033Abdominal pain; Abnormal biliary tract morphology; Cholelithiasis; Glucagonoma; Increased glucagon level; Neoplasm of the pancreas
GNE9p13.3100%gene with protein product603824IBM22-3 toe syndactyly; Abnormality of metabolism/homeostasis; Abnormality of the mitochondrion; Absent Achilles reflex; Adult onset; Attention deficit hyperactivity disorder; Autosomal dominant inheritance; Autosomal recessive inheritance; Cholelithiasis; Coarse facial features; Deposits immunoreactive to beta-amyloid protein; Distal amyotrophy; Distal muscle weakness; Dysostosis multiplex; Elevated hepatic transaminases; Elevated serum creatine phosphokinase; EMG: myopathic abnormalities; EMG: myotonic discharges; EMG: positive sharp waves; Epicanthus; Episodic abdominal pain; Expressive language delay; Fatty replacement of skeletal muscle; Foot dorsiflexor weakness; Frontal bossing; Gait disturbance; Generalized hirsutism; Generalized hypotonia; Global developmental delay; Hepatomegaly; Hepatosplenomegaly; High palate; High, narrow palate; Hip flexor weakness; Hoarse voice; Hyperkinesis; Hypertelorism; Hypoplastic nipples; Hypothyroidism; Increased variability in muscle fiber diameter; Inguinal hernia; Intellectual disability, mild; Joint hypermobility; Limb-girdle muscle atrophy; Limb-girdle muscle weakness; Limited shoulder movement; Limited wrist extension; Long hallux; Long philtrum; Low posterior hairline; Low-set ears; Memory impairment; Mildly elevated creatine phosphokinase; Muscle fiber inclusion bodies; Periorbital fullness; Prolonged partial thromboplastin time; Prolonged prothrombin time; Prominent forehead; Protuberant abdomen; Proximal muscle weakness; Rimmed vacuoles; Scoliosis; Seizures; Shoulder girdle muscle weakness; Sleep apnea; Smooth philtrum; Spinal deformities; Splenomegaly; Steppage gait; Synophrys; Thin upper lip vermilion; Thoracic hypoplasia; Tibialis muscle weakness; Upper airway obstruction; Wide nasal bridgeBone Marrow Failure Syndromes ; Rhabdomyolysis
HBB11p15.499.99%gene with protein product141900Abdominal pain; Abnormal bone structure; Abnormal hemoglobin; Abnormality of metabolism/homeostasis; Abnormality of the dentition; Abnormality of the skeletal system; Abnormality of the spleen; Anemia; Anxiety; Aseptic necrosis; Autosomal dominant inheritance; Autosomal recessive inheritance; Cardiomegaly; Chest pain; Cholelithiasis; Chronic hemolytic anemia; Delayed puberty; Depressed nasal bridge; Depressivity; Dyspnea; Feeding difficulties; Fever; Genu valgum; Heinz body anemia; Hematuria; Hemolytic anemia; Hepatomegaly; Hypersplenism; Hypochromic microcytic anemia; Hypoxemia; Immunodeficiency; Increased red cell sickling tendency; Increased serum ferritin; Iron deficiency anemia; Jaundice; Leukocytosis; Malabsorption; Malar prominence; Microcytic anemia; Muscle weakness; Nonspherocytic hemolytic anemia; Osteomyelitis; Osteoporosis; Pallor; Paresthesia; Persistence of hemoglobin F; Pigment gallstones; Priapism; Recurrent bacterial infections; Recurrent infections; Reduced alpha/beta synthesis ratio; Reduced beta/alpha synthesis ratio; Renal insufficiency; Reticulocytosis; Retinopathy; Splenomegaly; Stroke; Thrombocytosis; Upslanted palpebral fissureHemolytic Anemia
HBB11p15.499.99%gene with protein product141900Abdominal pain; Abnormal bone structure; Abnormal hemoglobin; Abnormality of metabolism/homeostasis; Abnormality of the dentition; Abnormality of the skeletal system; Abnormality of the spleen; Anemia; Anxiety; Aseptic necrosis; Autosomal dominant inheritance; Autosomal recessive inheritance; Cardiomegaly; Chest pain; Cholelithiasis; Chronic hemolytic anemia; Delayed puberty; Depressed nasal bridge; Depressivity; Dyspnea; Feeding difficulties; Fever; Genu valgum; Heinz body anemia; Hematuria; Hemolytic anemia; Hepatomegaly; Hypersplenism; Hypochromic microcytic anemia; Hypoxemia; Immunodeficiency; Increased red cell sickling tendency; Increased serum ferritin; Iron deficiency anemia; Jaundice; Leukocytosis; Malabsorption; Malar prominence; Microcytic anemia; Muscle weakness; Nonspherocytic hemolytic anemia; Osteomyelitis; Osteoporosis; Pallor; Paresthesia; Persistence of hemoglobin F; Pigment gallstones; Priapism; Recurrent bacterial infections; Recurrent infections; Reduced alpha/beta synthesis ratio; Reduced beta/alpha synthesis ratio; Renal insufficiency; Reticulocytosis; Retinopathy; Splenomegaly; Stroke; Thrombocytosis; Upslanted palpebral fissureHemolytic Anemia
HBB11p15.499.99%gene with protein product141900Abdominal pain; Abnormal bone structure; Abnormal hemoglobin; Abnormality of metabolism/homeostasis; Abnormality of the dentition; Abnormality of the skeletal system; Abnormality of the spleen; Anemia; Anxiety; Aseptic necrosis; Autosomal dominant inheritance; Autosomal recessive inheritance; Cardiomegaly; Chest pain; Cholelithiasis; Chronic hemolytic anemia; Delayed puberty; Depressed nasal bridge; Depressivity; Dyspnea; Feeding difficulties; Fever; Genu valgum; Heinz body anemia; Hematuria; Hemolytic anemia; Hepatomegaly; Hypersplenism; Hypochromic microcytic anemia; Hypoxemia; Immunodeficiency; Increased red cell sickling tendency; Increased serum ferritin; Iron deficiency anemia; Jaundice; Leukocytosis; Malabsorption; Malar prominence; Microcytic anemia; Muscle weakness; Nonspherocytic hemolytic anemia; Osteomyelitis; Osteoporosis; Pallor; Paresthesia; Persistence of hemoglobin F; Pigment gallstones; Priapism; Recurrent bacterial infections; Recurrent infections; Reduced alpha/beta synthesis ratio; Reduced beta/alpha synthesis ratio; Renal insufficiency; Reticulocytosis; Retinopathy; Splenomegaly; Stroke; Thrombocytosis; Upslanted palpebral fissureHemolytic Anemia
HK110q22.1100%gene with protein product142600Abnormality of the foot; Abnormality of the hand; Autosomal dominant inheritance; Autosomal recessive inheritance; Axonal regeneration; Cholecystitis; Cholelithiasis; Congenital onset; Constriction of peripheral visual field; Decreased motor nerve conduction velocity; Decreased number of large peripheral myelinated nerve fibers; Difficulty walking; Distal muscle weakness; Hyperbilirubinemia; Hyporeflexia; Jaundice; Macular atrophy; Nonspherocytic hemolytic anemia; Normochromic anemia; Normocytic anemia; Nyctalopia; Optic disc pallor; Peripheral hypomyelination; Peripheral neuropathy; Photophobia; Progressive; Reduced visual acuity; Reticulocytosis; SplenomegalyHemolytic Anemia
PEX191q23.2100%gene with protein product600279PXFAbnormal chorioretinal morphology; Abnormal cortical bone morphology; Abnormality of metabolism/homeostasis; Abnormality of movement; Abnormality of neuronal migration; Abnormality of retinal pigmentation; Abnormality of the hairline; Abnormality of the liver; Abnormality of the male genitalia; Abnormality of the palate; Anteverted nares; Ataxia; Atrial septal defect; Autosomal recessive inheritance; Behavioral abnormality; Bilateral single transverse palmar creases; Cataract; Central hypotonia; Cerebral atrophy; Cholelithiasis; Clitoral hypertrophy; CNS demyelination; Cognitive impairment; Constriction of peripheral visual field; Corneal opacity; Cranial asymmetry; Cryptorchidism; Death in infancy; Decreased body weight; Decreased fetal movement; Delayed closure of the anterior fontanelle; Depressed nasal bridge; Developmental regression; Dolichocephaly; Double outlet right ventricle; EEG abnormality; Elevated hepatic transaminases; Elevated levels of phytanic acid; Elevated long chain fatty acids; Epicanthus; Epiphyseal stippling; External ear malformation; Failure to thrive; Feeding difficulties in infancy; Flat face; Flat occiput; Generalized hypotonia; Global developmental delay; Hepatic failure; Hepatomegaly; High forehead; High palate; Hydrocephalus; Hydronephrosis; Hyperbilirubinemia; Hyperreflexia; Hypospadias; Jaundice; Low-set, posteriorly rotated ears; Macrocephaly; Malabsorption; Microcephaly; Micrognathia; Multicystic kidney dysplasia; Muscular hypotonia; Nyctalopia; Nystagmus; Optic atrophy; Patent ductus arteriosus; Periorbital fullness; Polymicrogyria; Posterior embryotoxon; Premature birth; Primary adrenal insufficiency; Profound global developmental delay; Progressive muscle weakness; Prominent nose; Ptosis; Pyloric stenosis; Reduced tendon reflexes; Renal tubular dysfunction; Respiratory insufficiency; Rod-cone dystrophy; Scaphocephaly; Seizures; Sensorineural hearing impairment; Severe global developmental delay; Severe muscular hypotonia; Short stature; Skeletal dysplasia; Spasticity; Strabismus; Triangular face; Underdeveloped supraorbital ridges; Upslanted palpebral fissure; Very long chain fatty acid accumulation; Visual impairment; Wide anterior fontanel; Wide nasal bridge
PFKM12q13.11100%gene with protein product610681PFKXAnemia; Autosomal recessive inheritance; Cholelithiasis; Exercise intolerance; Exercise-induced muscle cramps; Exercise-induced myoglobinuria; Gout; Hemolytic anemia; Hyperuricemia; Increased muscle glycogen content; Increased total bilirubin; Jaundice; Muscle weakness; Myotonia; Reduced erythrocyte 2,3-diphosphoglycerate concentration; Reticulocytosis; Skeletal muscle atrophy; Variable expressivityHemolytic Anemia ; Rhabdomyolysis
PKLR1q22100%gene with protein product609712Abnormality of the amniotic fluid; Autosomal dominant inheritance; Autosomal recessive inheritance; Cholecystitis; Cholelithiasis; Chronic hemolytic anemia; Congenital hemolytic anemia; Hydrops fetalis; Increased red cell osmotic fragility; Increased serum ferritin; Increased serum iron; Jaundice; Polycythemia; Prolonged neonatal jaundice; Reduced erythrocyte 2,3-diphosphoglycerate concentration; Reduced red cell pyruvate kinase activity; Reticulocytosis; Splenomegaly; Unconjugated hyperbilirubinemiaHemolytic Anemia
SEC23B20p11.2399.89%gene with protein product610512CDAN2Abnormality of the penis; Adenoma sebaceum; Anemia of inadequate production; Ataxia; Autosomal dominant inheritance; Autosomal recessive inheritance; Breast carcinoma; Cavernous hemangioma; Cholelithiasis; Cognitive impairment; Colorectal polyposis; Conjunctival hamartoma; Ductal carcinoma in situ; Endopolyploidy on chromosome studies of bone marrow; Furrowed tongue; Generalized hyperkeratosis; Global developmental delay; Goiter; Hamartomatous polyposis; Hashimoto thyroiditis; Hemangioma; Intellectual disability; Intestinal polyposis; Jaundice; Lipoma; Macrocephaly; Macroglossia; Macule; Melanocytic nevus; Meningioma; Mucosal telangiectasiae; Palmoplantar keratoderma; Papilloma; Papule; Reduced activity of N-acetylglucosaminyltransferase II; Reticulocytosis; Splenomegaly; Subcutaneous nodule; TrichilemmomaAplastic Anemia ; Bone Marrow Failure Syndromes ; Hemolytic Anemia
TBX122q11.2194.16%gene with protein product602054VCFAbnormal aortic arch morphology; Abnormal pulmonary valve morphology; Abnormality of metabolism/homeostasis; Abnormality of the ear; Abnormality of the endocrine system; Abnormality of the hand; Abnormality of the middle ear; Abnormality of the pharynx; Abnormality of the thymus; Abnormality of the tonsils; Acne; Aggressive behavior; Amblyopia; Arachnodactyly; Atrial septal defect; Attention deficit hyperactivity disorder; Autosomal dominant inheritance; Autosomal recessive inheritance; Bifid uvula; Bipolar affective disorder; Blepharophimosis; Broad forehead; Broad hallux; Bulbous nose; Carious teeth; Cholelithiasis; Chronic otitis media; Cleft palate; Clinodactyly of the 5th finger; Coarctation of aorta; Complete atrioventricular canal defect; Conductive hearing impairment; Constipation; Corneal neovascularization; Delayed speech and language development; Depressed nasal ridge; Double outlet right ventricle; Downslanted palpebral fissures; Dysphasia; Epicanthus; Esophoria; Esotropia; Exotropia; Femoral hernia; Global developmental delay; High forehead; High, narrow palate; Hydronephrosis; Hypertelorism; Hypocalcemia; Hypoparathyroidism; Hypoplasia of the thymus; Hypothyroidism; Immunodeficiency; Impaired T cell function; Inguinal hernia; Intellectual disability; Intellectual disability, mild; Interrupted aortic arch; Long face; Long philtrum; Low-set ears; Malar flattening; Microcephaly; Micrognathia; Midface retrusion; Mood swings; Muscular hypotonia; Myalgia; Narrow face; Nasal speech; Neurological speech impairment; Obesity; Occipital myelomeningocele; Open mouth; Overfolded helix; Paranoia; Parathyroid agenesis; Parathyroid hypoplasia; Patent ductus arteriosus; Pierre-Robin sequence; Platybasia; Postaxial polydactyly; Posterior embryotoxon; Preauricular pit; Prominent nasal bridge; Proptosis; Ptosis; Recurrent infections; Renal dysplasia; Renal hypoplasia; Retinal vascular tortuosity; Retrognathia; Right aortic arch with mirror image branching; Sclerocornea; Scoliosis; Seborrheic dermatitis; Seizures; Short neck; Short palpebral fissure; Short philtrum; Short stature; Small earlobe; Specific learning disability; Telecanthus; Tetany; Tetralogy of Fallot; Transposition of the great arteries; Truncus arteriosus; Umbilical hernia; Underdeveloped nasal alae; Unilateral primary pulmonary dysgenesis; Unilateral renal agenesis; Upslanted palpebral fissure; Velopharyngeal insufficiency; Ventricular septal defect; Wide nasal bridgeAutoimmune Disorders ; Disorders of Sex Development; Primary Immunodeficiency
TPI112p13.31100%gene with protein product190450Abnormality of immune system physiology; Autosomal recessive inheritance; Central nervous system degeneration; Cholecystitis; Cholelithiasis; Chronic hemolytic anemia; Congestive heart failure; Diaphragmatic paralysis; Dystonia; Generalized hypotonia; Global developmental delay; Hemolytic anemia; Hyporeflexia; Jaundice; Kyphosis; Muscular hypotonia; Myopathy; Normochromic anemia; Normocytic anemia; Peripheral neuropathy; Progressive muscle weakness; Respiratory insufficiency due to muscle weakness; Skeletal muscle atrophy; Spasticity; Splenomegaly; Tremor; Unsteady gaitHemolytic Anemia
UROS10q26.2100%gene with protein product606938Abnormal blistering of the skin; Abnormal urinary color; Abnormality of the foot; Abnormality of the hand; Abnormality of the heme biosynthetic pathway; Abnormality of the mouth; Absent eyebrow; Alopecia; Atypical scarring of skin; Autosomal recessive inheritance; Cholelithiasis; Congenital onset; Conjunctivitis; Corneal scarring; Cutaneous photosensitivity; Hemolytic anemia; Hyperpigmentation of the skin; Hypertrichosis; Hypopigmentation of the skin; Immunodeficiency; Joint contracture of the hand; Loss of eyelashes; Osteolysis; Osteopenia; Pathologic fracture; Recurrent fractures; Recurrent skin infections; Scleroderma; Short stature; Splenomegaly; Thickened skin; Thrombocytopenia; Vertebral compression fractures


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome