XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

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SELECTED GENES FOR YOUR SLICE

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Phenotypes
Biliary tract abnormality

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
ABCC210q24.299.99%gene with protein product601107CMOATAbnormal urinary color; Abnormality of the gastric mucosa; Autosomal recessive inheritance; Biliary tract abnormality; Conjugated hyperbilirubinemia; Jaundice
ABCC210q24.299.99%gene with protein product601107CMOATAbnormal urinary color; Abnormality of the gastric mucosa; Autosomal recessive inheritance; Biliary tract abnormality; Conjugated hyperbilirubinemia; Jaundice
AKR1D17q33100%gene with protein product604741SRD5B1Abnormal bleeding; Abnormality of the coagulation cascade; Autosomal recessive inheritance; Biliary tract abnormality; Chronic hepatic failure; Cirrhosis; Diarrhea; Elevated alkaline phosphatase; Elevated hepatic transaminases; Failure to thrive; Hepatic failure; Hepatomegaly; Hyperbilirubinemia; Intrahepatic cholestasis; Jaundice; Malabsorption; Neonatal cholestatic liver disease; Neonatal onset; Splenomegaly; Steatorrhea
AMACR5p13.2100%gene with protein product604489Abnormality of the coagulation cascade; Autosomal recessive inheritance; Biliary tract abnormality; Cholestasis; Depressivity; Elevated hepatic transaminases; Failure to thrive; Fat malabsorption; Giant cell hepatitis; Hepatic failure; Hepatomegaly; Hyperbilirubinemia; Hypergonadotropic hypogonadism; Intrahepatic cholestasis; Migraine; Neonatal onset; Peripheral neuropathy; Phenotypic variability; Pigmentary retinopathy; Prolonged neonatal jaundice; Sensorimotor neuropathy; Spasticity; Status epilepticus; Type II diabetes mellitus; Visual impairment
B3GLCT13q12.399.62%gene with protein productFormer name = B3GALTL610308B3GALTLAbnormal cardiac septum morphology; Abnormality of the pulmonary artery; Agenesis of corpus callosum; Agenesis of maxillary lateral incisor; Anterior chamber synechiae; Atrial septal defect; Autosomal recessive inheritance; Biliary tract abnormality; Bilobate gallbladder; Birth length less than 3rd percentile; Brachycephaly; Brachydactyly; Broad neck; Cataract; Cerebral atrophy; Cleft palate; Cleft upper lip; Clinodactyly of the 5th finger; Clitoral hypoplasia; Conical incisor; Corneal opacity; Craniosynostosis; Cryptorchidism; Decreased body weight; Decreased fetal movement; Diastasis recti; Disproportionate short-limb short stature; Facial hypertrichosis; Feeding difficulties in infancy; Frontal bossing; Glaucoma; Global developmental delay; Hemivertebrae; Hydrocephalus; Hydronephrosis; Hypertelorism; Hypoplasia of the uterus; Hypoplasia of the vagina; Hypoplastic labia majora; Hypospadias; Intellectual disability; Intrauterine growth retardation; Iris coloboma; Joint laxity; Limited elbow movement; Long philtrum; Macrocephaly; Microcephaly; Microcornea; Micrognathia; Micromelia; Microtia, second degree; Myopia; Nystagmus; Pectus excavatum; Pes cavus; Peters anomaly; Polyhydramnios; Postnatal growth retardation; Preauricular pit; Preauricular skin tag; Prominent forehead; Protruding ear; Proximal placement of thumb; Ptosis; Pulmonic stenosis; Retinal coloboma; Rhizomelia; Round face; Scoliosis; Seizures; Short columella; Short foot; Short lingual frenulum; Short metacarpal; Short metatarsal; Short palm; Short palpebral fissure; Short toe; Single transverse palmar crease; Square pelvis bone; Stenosis of the external auditory canal; Syndactyly; Thin upper lip vermilion; Toe syndactyly; Umbilical hernia; Upslanted palpebral fissure; Ureteral duplication; Ventricular septal defect; Ventriculomegaly; Webbed neck; Wide anterior fontanel; Wide intermamillary distanceDisorders of Sex Development
BBS111q13.2100%gene with protein product209901Abnormal electroretinogram; Asthma; Ataxia; Autosomal recessive inheritance; Biliary tract abnormality; Brachydactyly; Broad foot; Decreased testicular size; Delayed speech and language development; Dental crowding; Diabetes mellitus; Foot polydactyly; Gait imbalance; Global developmental delay; Hepatic fibrosis; High, narrow palate; Hirsutism; Hypertension; Hypodontia; Hypogonadism; Hypoplasia of penis; Hypoplasia of the ovary; Intellectual disability; Left ventricular hypertrophy; Multicystic kidney dysplasia; Nephrogenic diabetes insipidus; Neurological speech impairment; Nystagmus; Obesity; Pigmentary retinopathy; Poor coordination; Postaxial hand polydactyly; Radial deviation of finger; Retinal degeneration; Short foot; Short stature; Specific learning disability; Strabismus; SyndactylyBardet-Biedl Syndrome ; Disorders of Sex Development; Heterotaxy ; Obesity
BBS415q24.199.96%gene with protein product600374Abnormal electroretinogram; Asthma; Ataxia; Autosomal recessive inheritance; Biliary tract abnormality; Brachydactyly; Broad foot; Cryptorchidism; Decreased testicular size; Delayed speech and language development; Dental crowding; Diabetes mellitus; External genital hypoplasia; Foot polydactyly; Gait imbalance; Global developmental delay; Hepatic fibrosis; High, narrow palate; Hirsutism; Hypertension; Hypodontia; Hypogonadism; Hypoplasia of penis; Hypoplasia of the ovary; Intellectual disability; Left ventricular hypertrophy; Multicystic kidney dysplasia; Nephrogenic diabetes insipidus; Neurological speech impairment; Nyctalopia; Nystagmus; Obesity; Pigmentary retinopathy; Polydactyly; Poor coordination; Postaxial hand polydactyly; Radial deviation of finger; Renal cyst; Retinal degeneration; Rod-cone dystrophy; Short foot; Short stature; Specific learning disability; Strabismus; SyndactylyBardet-Biedl Syndrome ; Disorders of Sex Development; Heterotaxy ; Obesity
CIITA16p13.13100%gene with protein product600005MHC2TAAgammaglobulinemia; Autosomal dominant inheritance; Autosomal recessive inheritance; Biliary tract abnormality; Chronic lymphocytic meningitis; Chronic mucocutaneous candidiasis; Colitis; Cutaneous anergy; Encephalitis; Failure to thrive; Malabsorption; Neutropenia; Panhypogammaglobulinemia; Protracted diarrhea; Recurrent bacterial infections; Recurrent fungal infections; Recurrent lower respiratory tract infections; Recurrent protozoan infections; Recurrent upper respiratory tract infections; Recurrent urinary tract infections; Recurrent viral infections; Villous atrophy; Viral hepatitis
CYP7B18q12.3100%gene with protein product603711SPG5AAbnormality of coagulation; Abnormality of the cerebral white matter; Abnormality of the coagulation cascade; Abnormality of the urinary system; Acholic stools; Ankle clonus; Autosomal recessive inheritance; Babinski sign; Biliary tract abnormality; Cirrhosis; Congenital hepatic fibrosis; Diarrhea; Dysarthria; Elevated alkaline phosphatase; Elevated hepatic transaminases; Failure to thrive; Gastrointestinal hemorrhage; Hepatic failure; Hepatitis; Hepatomegaly; Hyperreflexia; Impaired distal proprioception; Impaired vibration sensation in the lower limbs; Impaired vibratory sensation; Intrahepatic cholestasis; Jaundice; Lower limb amyotrophy; Lower limb muscle weakness; Lower limb spasticity; Neonatal cholestatic liver disease; Neonatal onset; Optic atrophy; Paraplegia; Pes cavus; Progressive; Pruritus; Spastic gait; Spastic paraplegia; Splenomegaly; Steatorrhea; Urinary incontinence
DZIP1L3q22.3100%gene with protein product617570Biliary tract abnormality; Congenital hepatic fibrosis; Depressed nasal ridge; Hepatic cysts; Hypoplasia of the ear cartilage; Low-set, posteriorly rotated ears; Macrotia; Micrognathia; Multiple renal cysts; Pancreatic cysts; Renal hypoplasia/aplasia; Renal insufficiency; Respiratory insufficiency
ESCO28p21.1100%gene with protein product609353RBSAbnormality of cardiovascular system morphology; Abnormality of the metacarpal bones; Absent earlobe; Absent radius; Accessory spleen; Ankle contracture; Aortic valve stenosis; Aplasia of the ulna; Aplasia/Hypoplasia of the thumb; Atrial septal defect; Autosomal recessive inheritance; Bicornuate uterus; Biliary tract abnormality; Blue sclerae; Bowing of the long bones; Brachycephaly; Brachydactyly; Cafe-au-lait spot; Cataract; Cleft palate; Cleft upper lip; Clinodactyly; Clinodactyly of the 5th finger; Clitoral hypertrophy; Complete duplication of thumb phalanx; Cranial nerve paralysis; Craniosynostosis; Cryptorchidism; Cystic hygroma; Downslanted palpebral fissures; Elbow flexion contracture; Enlarged labia minora; External ear malformation; Eyelid coloboma; Fair hair; Frontal encephalocele; Global developmental delay; Hand oligodactyly; High palate; Hip contracture; Horseshoe kidney; Hydrocephalus; Hypertelorism; Hypoplasia of the radius; Hypospadias; Intellectual disability; Intrauterine growth retardation; Knee flexion contracture; Long penis; Low-set ears; Malar flattening; Mesomelic arm shortening; Microcephaly; Micrognathia; Microphthalmia; Midface capillary hemangioma; Narrow naris; Opacification of the corneal stroma; Patent ductus arteriosus; Phocomelia; Polycystic kidney dysplasia; Polyhydramnios; Posteriorly rotated ears; Postnatal growth retardation; Premature birth; Premature separation of centromeric heterochromatin; Proptosis; Proximal placement of thumb; Radial deviation of finger; Radioulnar synostosis; Seizures; Severe intrauterine growth retardation; Shallow orbits; Short neck; Short stature; Short thumb; Sparse hair; Syndactyly; Talipes equinovalgus; Tetraphocomelia; Underdeveloped nasal alae; Underdeveloped supraorbital ridges; Ventricular septal defect; Wide nasal bridge; Wormian bones; Wrist flexion contracture
HNF1B17q12100%gene with protein product189907TCF2Atretic vas deferens; Autosomal dominant inheritance; Biliary tract abnormality; Cerebral cortical atrophy; Decreased numbers of nephrons; Diabetes mellitus; Elevated hepatic transaminases; Elevated serum creatinine; Epididymal cyst; Glucose intolerance; Glycosuria; Gout; Hypospadias; Insulin resistance; Late onset; Multicystic kidney dysplasia; Nephrolithiasis; Onset; Phenotypic variability; Proteinuria; Reduced sperm motility; Short stature; Stage 5 chronic kidney disease; Type II diabetes mellitus; Ureteropelvic junction obstructionCongenital Kidney and Urinary Tract (CKUT) Anomalies
HSD3B716p11.2100%gene with protein product607764Abnormality of coagulation; Abnormality of the coagulation cascade; Acholic stools; Autosomal recessive inheritance; Biliary tract abnormality; Cirrhosis; Diarrhea; Elevated hepatic transaminases; Failure to thrive; Gastrointestinal hemorrhage; Giant cell hepatitis; Hepatic failure; Hepatomegaly; Hyperbilirubinemia; Hypocholesterolemia; Intrahepatic cholestasis; Jaundice; Malabsorption; Neonatal cholestatic liver disease; Neonatal onset; Splenomegaly; Steatorrhea
MKKS20p12.2100%gene with protein product604896BBS6Abnormal electroretinogram; Abnormality of cardiovascular system morphology; Aganglionic megacolon; Anal atresia; Asthma; Ataxia; Autosomal recessive inheritance; Biliary tract abnormality; Brachydactyly; Broad foot; Congenital hip dislocation; Cryptorchidism; Decreased testicular size; Delayed speech and language development; Dental crowding; Diabetes mellitus; Edema; Edema of the lower limbs; External genital hypoplasia; Foot polydactyly; Gait imbalance; Glandular hypospadias; Global developmental delay; Hepatic fibrosis; High, narrow palate; Hirsutism; Hydrometrocolpos; Hydronephrosis; Hydroureter; Hypertension; Hypodontia; Hypogonadism; Hypoplasia of penis; Hypoplasia of the ovary; Hypospadias; Intellectual disability; Left ventricular hypertrophy; Mesoaxial hand polydactyly; Multicystic kidney dysplasia; Nephrogenic diabetes insipidus; Neurological speech impairment; Nystagmus; Obesity; Pigmentary retinopathy; Polycystic kidney dysplasia; Polydactyly; Poor coordination; Postaxial hand polydactyly; Pulmonary hypoplasia; Radial deviation of finger; Rectovaginal fistula; Renal cyst; Retinal degeneration; Rod-cone dystrophy; Short foot; Short stature; Specific learning disability; Strabismus; Syndactyly; Transverse vaginal septum; Urogenital sinus anomaly; Vaginal atresia; Vesicovaginal fistulaBardet-Biedl Syndrome ; Disorders of Sex Development; Heterotaxy ; Obesity
PKHD16p12.3-p12.299.97%gene with protein product606702TIGM1Absence of renal corticomedullary differentiation; Autosomal recessive inheritance; Biliary tract abnormality; Congenital hepatic fibrosis; Dehydration; Depressed nasal ridge; Enlarged kidney; Esophageal varix; Hepatic cysts; Hepatomegaly; Hypoplasia of the ear cartilage; Low-set, posteriorly rotated ears; Macrotia; Micrognathia; Multiple renal cysts; Oligohydramnios; Pancreatic cysts; Periportal fibrosis; Polycystic kidney dysplasia; Portal hypertension; Potter facies; Pulmonary hypoplasia; Renal cyst; Renal hypoplasia/aplasia; Renal insufficiency; Respiratory insufficiency; Splenomegaly; Tubulointerstitial fibrosis
RFX51q21.3100%gene with protein product601863Agammaglobulinemia; Autosomal dominant inheritance; Autosomal recessive inheritance; Biliary tract abnormality; Chronic lymphocytic meningitis; Chronic mucocutaneous candidiasis; Colitis; Cutaneous anergy; Encephalitis; Failure to thrive; Malabsorption; Neutropenia; Panhypogammaglobulinemia; Protracted diarrhea; Recurrent bacterial infections; Recurrent fungal infections; Recurrent lower respiratory tract infections; Recurrent protozoan infections; Recurrent upper respiratory tract infections; Recurrent urinary tract infections; Recurrent viral infections; Villous atrophy; Viral hepatitisAutoimmune Disorders
RFXANK19p13.11100%gene with protein product603200Agammaglobulinemia; Autosomal dominant inheritance; Autosomal recessive inheritance; Biliary tract abnormality; Chronic lymphocytic meningitis; Chronic mucocutaneous candidiasis; Colitis; Cutaneous anergy; Encephalitis; Failure to thrive; Malabsorption; Neutropenia; Panhypogammaglobulinemia; Protracted diarrhea; Recurrent bacterial infections; Recurrent fungal infections; Recurrent lower respiratory tract infections; Recurrent protozoan infections; Recurrent upper respiratory tract infections; Recurrent urinary tract infections; Recurrent viral infections; Villous atrophy; Viral hepatitisAutoimmune Disorders
RFXAP13q13.3100%gene with protein product601861Agammaglobulinemia; Autosomal dominant inheritance; Autosomal recessive inheritance; Biliary tract abnormality; Chronic lymphocytic meningitis; Chronic mucocutaneous candidiasis; Colitis; Cutaneous anergy; Encephalitis; Failure to thrive; Malabsorption; Neutropenia; Panhypogammaglobulinemia; Protracted diarrhea; Recurrent bacterial infections; Recurrent fungal infections; Recurrent lower respiratory tract infections; Recurrent protozoan infections; Recurrent upper respiratory tract infections; Recurrent urinary tract infections; Recurrent viral infections; Villous atrophy; Viral hepatitisAutoimmune Disorders
SDCCAG81q43-q4499.91%gene with protein product613524Abnormal electroretinogram; Abnormality of retinal pigmentation; Asthma; Ataxia; Autosomal recessive inheritance; Biliary tract abnormality; Brachydactyly; Broad foot; Bronchiolitis; Cognitive impairment; Decreased testicular size; Delayed speech and language development; Dental crowding; Diabetes mellitus; External genital hypoplasia; Foot polydactyly; Gait imbalance; Global developmental delay; Hepatic fibrosis; High, narrow palate; Hirsutism; Hypertension; Hypodontia; Hypogonadism; Hypoplasia of penis; Hypoplasia of the ovary; Intellectual disability; Left ventricular hypertrophy; Multicystic kidney dysplasia; Nephrogenic diabetes insipidus; Nephronophthisis; Neurological speech impairment; Nystagmus; Obesity; Pigmentary retinopathy; Poor coordination; Postaxial hand polydactyly; Premature ovarian insufficiency; Progressive visual loss; Radial deviation of finger; Recurrent otitis media; Recurrent respiratory infections; Renal agenesis; Renal cyst; Renal dysplasia; Renal insufficiency; Respiratory distress; Retinal degeneration; Retinal dystrophy; Rod-cone dystrophy; Short foot; Short stature; Specific learning disability; Stage 5 chronic kidney disease; Strabismus; Syndactyly; Visual impairmentBardet-Biedl Syndrome ; Heterotaxy ; Obesity
STK1119p13.3100%gene with protein product602216Abdominal pain; Abnormal pigmentation of the oral mucosa; Abnormality of metabolism/homeostasis; Abnormality of the mouth; Abnormality of the ureter; Autosomal dominant inheritance; Biliary tract abnormality; Breast carcinoma; Clubbing of fingers; Cryptorchidism; Gastrointestinal carcinoma; Gastrointestinal hemorrhage; Gonadal dysgenesis; Gynecomastia; Hamartomatous polyposis; Hypermelanotic macule; Increased level of L-fucose in urine; Intestinal bleeding; Intussusception; Iron deficiency anemia; Multiple lentigines; Nasal polyposis; Neoplasm of the pancreas; Ovarian cyst; Precocious puberty with Sertoli cell tumor; Rectal prolapse; Somatic mutation; Sporadic; Teratoma
UGT1A12q37.1complex locus constituent191740UGT1, GNT1Autosomal recessive inheritance; Biliary tract abnormality; Cerebral palsy; Encephalopathy; Infantile muscular hypotonia; Jaundice; Kernicterus; Neonatal hyperbilirubinemia; Neonatal unconjugated hyperbilirubinemia; Prolonged neonatal jaundice; Unconjugated hyperbilirubinemia; Very rare


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome