XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

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SELECTED GENES FOR YOUR SLICE

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Phenotypes
Abnormality of the periventricular white matter

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
AMPD21p13.3100%gene with protein product102771Abnormality of the periventricular white matter; Abnormality of the pinna; Autosomal recessive inheritance; Cerebral cortical atrophy; Clonus; Cortical visual impairment; Decreased body weight; Downslanted palpebral fissures; Facial hypotonia; Global developmental delay; Hyperreflexia; Hypoplasia of the corpus callosum; Macroglossia; Microcephaly; Midface retrusion; Muscular hypotonia of the trunk; Narrow forehead; Optic atrophy; Peripheral axonal neuropathy; Progressive microcephaly; Scissor gait; Seizures; Short stature; Short upper lip; Skeletal muscle atrophy; Spastic paraplegia; Spasticity; Ventriculomegaly
AP4B11p13.2100%gene with protein product607245SPG47Abnormality of the periventricular white matter; Acetabular dysplasia; Autosomal recessive inheritance; Babinski sign; Bulbous nose; Coarse facial features; Congenital onset; Delayed speech and language development; Dysarthria; Dystonia; Flexion contracture; Global developmental delay; Hyperreflexia; Hypoplasia of the corpus callosum; Intellectual disability, severe; Microcephaly; Narrow forehead; Neonatal hypotonia; Seizures; Short philtrum; Slow progression; Spastic paraplegia; Ventriculomegaly; Waddling gait; Wide mouth
AP5Z17p22.1100%gene with protein product613653KIAA0415Abnormality of the cervical spine; Abnormality of the periventricular white matter; Ataxia; Autosomal recessive inheritance; Broad-based gait; Cognitive impairment; Dysmetria; Elevated serum creatine phosphokinase; Global developmental delay; Hyperintensity of cerebral white matter on MRI; Hyperreflexia; Hypoplasia of the corpus callosum; Intellectual disability; Lower limb muscle weakness; Mental deterioration; Myoclonus; Parkinsonism; Peripheral neuropathy; Progressive; Progressive spastic paraplegia; Retinopathy; Spastic gait; Spastic paraplegia; Urinary bladder sphincter dysfunction; Urinary incontinence
CYP27A12q35100%gene with protein product606530CYP27Abnormal pyramidal signs; Abnormality of central somatosensory evoked potentials; Abnormality of cholesterol metabolism; Abnormality of extrapyramidal motor function; Abnormality of the dentate nucleus; Abnormality of the periventricular white matter; Abnormality of vision; Angina pectoris; Ataxia; Atherosclerosis; Autosomal recessive inheritance; Cataract; Cerebellar atrophy; Cerebral atrophy; Cholelithiasis; Delusions; Dementia; Depressivity; Developmental regression; Diarrhea; Dystonia; EEG with generalized slow activity; EMG: axonal abnormality; Hallucinations; Hypercholesterolemia; Hyperreflexia; Intellectual disability; Muscle weakness; Myocardial infarction; Myoclonus; Neurological speech impairment; Optic disc pallor; Osteoporosis; Peripheral neuropathy; Pseudobulbar paralysis; Respiratory insufficiency; Seizures; Spasticity; Tendon xanthomatosis; Tremor; Xanthelasma
CYP27A12q35100%gene with protein product606530CYP27Abnormal pyramidal signs; Abnormality of central somatosensory evoked potentials; Abnormality of cholesterol metabolism; Abnormality of extrapyramidal motor function; Abnormality of the dentate nucleus; Abnormality of the periventricular white matter; Abnormality of vision; Angina pectoris; Ataxia; Atherosclerosis; Autosomal recessive inheritance; Cataract; Cerebellar atrophy; Cerebral atrophy; Cholelithiasis; Delusions; Dementia; Depressivity; Developmental regression; Diarrhea; Dystonia; EEG with generalized slow activity; EMG: axonal abnormality; Hallucinations; Hypercholesterolemia; Hyperreflexia; Intellectual disability; Muscle weakness; Myocardial infarction; Myoclonus; Neurological speech impairment; Optic disc pallor; Osteoporosis; Peripheral neuropathy; Pseudobulbar paralysis; Respiratory insufficiency; Seizures; Spasticity; Tendon xanthomatosis; Tremor; Xanthelasma
DDHD28p11.2399.94%gene with protein product615003SAMWD1Abnormality of the periventricular white matter; Autosomal recessive inheritance; Babinski sign; Dysarthria; Dysphagia; Global developmental delay; Hyperreflexia; Hypoplasia of the corpus callosum; Intellectual disability; Lower limb muscle weakness; Progressive; Short stature; Spastic paraplegia; Strabismus; Telecanthus
FA2H16q23.1100%gene with protein product611026FAXDC1, SPG35Abnormality of the periventricular white matter; Ankle clonus; Atrophy/Degeneration affecting the brainstem; Autosomal recessive inheritance; Babinski sign; Cerebellar atrophy; Corpus callosum atrophy; Difficulty walking; Dysarthria; Dysdiadochokinesis; Dysmetria; Dysmyelinating leukodystrophy; Dystonia; Foot dorsiflexor weakness; Frequent falls; Generalized dystonia; Hypoplasia of the corpus callosum; Intellectual disability; Lower limb hypertonia; Lower limb spasticity; Mental deterioration; Neurodegeneration; Nystagmus; Oculomotor apraxia; Optic atrophy; Progressive; Seizures; Spastic paraparesis; Spastic paraplegia; Spastic tetraparesis; Strabismus; Urinary urgency
HIKESHI11q14.299.89%gene with protein product614908C11orf73Abnormality of the periventricular white matter; Autosomal recessive inheritance; Clonus; Delayed myelination; Failure to thrive; Feeding difficulties; Flexion contracture; Generalized hypotonia; Global developmental delay; Infantile onset; Nystagmus; Spasticity
ISCA214q24.3100%gene with protein product615317HBLD1Abnormality of the periventricular white matter; Absent speech; Autosomal recessive inheritance; Leukodystrophy; Optic atrophy; Spasticity
LAMA118p11.31100%gene with protein product150320LAMAAbnormality of the periventricular white matter; Amblyopia; Autosomal recessive inheritance; Cerebellar cyst; Cerebellar dysplasia; Cerebellar vermis hypoplasia; Delayed speech and language development; Dilated fourth ventricle; Motor delay; Myopia; Nystagmus; Oculomotor apraxia; Retinal atrophy; Retinal dystrophy; Retinal thinning; Strabismus; Variable expressivity
LARGE122q12.3100%gene with protein productFormer name = LARGE603590LARGEAbnormal aldolase level; Abnormal lactate dehydrogenase activity; Abnormal levels of creatine kinase in blood; Abnormality of neuronal migration; Abnormality of the periventricular white matter; Abnormality of the voice; Absent septum pellucidum; Achilles tendon contracture; Agenesis of corpus callosum; Anal atresia; Anophthalmia; Aplasia/Hypoplasia involving the skeletal musculature; Areflexia; Atresia of the external auditory canal; Autosomal recessive inheritance; Babinski sign; Blindness; Buphthalmos; Cataract; Cerebellar dysplasia; Cerebellar hypoplasia; Chorioretinal dysplasia; Cleft palate; Cleft upper lip; Cognitive impairment; Coloboma; Congenital contracture; Congenital muscular dystrophy; Corneal opacity; Cryptorchidism; Dandy-Walker malformation; Decreased light- and dark-adapted electroretinogram amplitude; EEG abnormality; Elbow flexion contracture; Elevated serum creatine phosphokinase; EMG abnormality; EMG: myopathic abnormalities; Excessive daytime sleepiness; Facial palsy; Flexion contracture; Gait disturbance; Generalized hypotonia; Glaucoma; Global developmental delay; Heterogeneous; Horizontal nystagmus; Hydrocephalus; Hypertonia; Hypoplasia of penis; Hypoplasia of the brainstem; Hypoplasia of the corpus callosum; Hypoplasia of the pons; Hypoplastic male external genitalia; Hyporeflexia; Infantile onset; Intellectual disability; Intellectual disability, profound; Intellectual disability, severe; Joint contracture of the hand; Lissencephaly; Lower limb hyperreflexia; Macrocephaly; Macroglossia; Macrogyria; Megalocornea; Meningoencephalocele; Metatarsus valgus; Microcephaly; Microphthalmia; Microtia; Motor delay; Muscle weakness; Muscular dystrophy; Muscular hypotonia; Myopathy; Myopia; Neurological speech impairment; Occipital encephalocele; Optic atrophy; Optic nerve hypoplasia; Pachygyria; Peters anomaly; Phenotypic variability; Polymicrogyria; Posterior fossa cyst; Proximal muscle weakness; Renal dysplasia; Retinal atrophy; Retinal detachment; Retinal dysplasia; Retinal dystrophy; Seizures; Severe muscular hypotonia; Short stature; Skeletal muscle atrophy; Specific learning disability; Strabismus; Thick cerebral cortex; Type II lissencephaly; Visual impairmentMuscular dystropy-dystroglycanopathy (Walker-Warburg)
LYRM75q23.3-q31.188.47%gene with protein product615831C5orf31Abnormality of the periventricular white matter; Anemia; Ataxia; Autosomal recessive inheritance; Brisk reflexes; Cerebral atrophy; Developmental regression; Dysarthria; Exotropia; External ophthalmoplegia; Failure to thrive; Gait disturbance; Generalized hypotonia; Global developmental delay; Hypoplasia of the corpus callosum; Increased serum lactate; Intellectual disability; Lactic acidosis; Lethargy; Muscle weakness; Nystagmus; Optic disc pallor; Progressive; Rapidly progressive; Respiratory failure; Spastic tetraparesis
PSAP10q22.199.99%gene with protein product176801SAP1, GLBAAbnormality of eye movement; Abnormality of glycosphingolipid metabolism; Abnormality of the periventricular white matter; Anemia; Autosomal recessive inheritance; Babinski sign; Central apnea; Cerebral dysmyelination; CNS demyelination; Congenital onset; Death in childhood; Death in infancy; Decreased nerve conduction velocity; Developmental regression; Dysarthria; Dysphagia; Dystonia; Erlenmeyer flask deformity of the femurs; Fasciculations; Feeding difficulties; Gait ataxia; Generalized clonic seizures; Generalized hypotonia; Generalized tonic-clonic seizures; Global brain atrophy; Global developmental delay; Hepatomegaly; Hepatosplenomegaly; Hyperkinesis; Hyperreflexia; Hypertonia; Hypoplasia of the corpus callosum; Hyporeflexia; Increased cerebral lipofuscin; Increased CSF protein; Infantile onset; Loss of speech; Mental deterioration; Muscle weakness; Muscular hypotonia; Myoclonus; Neuronal loss in central nervous system; Osteopenia; Peripheral demyelination; Polyneuropathy; Recurrent respiratory infections; Respiratory failure; Respiratory insufficiency; Seizures; Spastic tetraparesis; Splenomegaly; Thrombocytopenia; Urinary incontinence; Variable expressivity
PSAP10q22.199.99%gene with protein product176801SAP1, GLBAAbnormality of eye movement; Abnormality of glycosphingolipid metabolism; Abnormality of the periventricular white matter; Anemia; Autosomal recessive inheritance; Babinski sign; Central apnea; Cerebral dysmyelination; CNS demyelination; Congenital onset; Death in childhood; Death in infancy; Decreased nerve conduction velocity; Developmental regression; Dysarthria; Dysphagia; Dystonia; Erlenmeyer flask deformity of the femurs; Fasciculations; Feeding difficulties; Gait ataxia; Generalized clonic seizures; Generalized hypotonia; Generalized tonic-clonic seizures; Global brain atrophy; Global developmental delay; Hepatomegaly; Hepatosplenomegaly; Hyperkinesis; Hyperreflexia; Hypertonia; Hypoplasia of the corpus callosum; Hyporeflexia; Increased cerebral lipofuscin; Increased CSF protein; Infantile onset; Loss of speech; Mental deterioration; Muscle weakness; Muscular hypotonia; Myoclonus; Neuronal loss in central nervous system; Osteopenia; Peripheral demyelination; Polyneuropathy; Recurrent respiratory infections; Respiratory failure; Respiratory insufficiency; Seizures; Spastic tetraparesis; Splenomegaly; Thrombocytopenia; Urinary incontinence; Variable expressivity
SEPSECS4p15.299.93%gene with protein product613009Abnormality of the periventricular white matter; Autosomal recessive inheritance; Cerebellar atrophy; Cerebral atrophy; Chorea; Clonus; Delayed myelination; Global developmental delay; Hypoplasia of the corpus callosum; Infantile onset; Intellectual disability, profound; Irritability; Limb joint contracture; Progressive microcephaly; Seizures; Sleep disturbance; Spastic tetraplegia
SPG1115q21.199.98%gene with protein product610844KIAA1840Abnormal lower motor neuron morphology; Abnormal pyramidal signs; Abnormal upper motor neuron morphology; Abnormality of the periventricular white matter; Adult onset; Agenesis of corpus callosum; Amyotrophic lateral sclerosis; Ankle clonus; Aplasia/Hypoplasia of the corpus callosum; Ataxia; Autosomal recessive inheritance; Babinski sign; Bulbar signs; Cerebral cortical atrophy; Childhood onset; Cognitive impairment; Decreased muscle mass; Decreased number of peripheral myelinated nerve fibers; Degeneration of the lateral corticospinal tracts; Distal amyotrophy; Distal muscle weakness; Distal peripheral sensory neuropathy; Distal sensory impairment; Dysarthria; Dysphagia; EMG abnormality; Fasciculations; Foot dorsiflexor weakness; Gait disturbance; Gaze-evoked nystagmus; Hyperreflexia; Hypoplasia of the corpus callosum; Impaired vibration sensation in the lower limbs; Intellectual disability; Juvenile onset; Knee clonus; Lower limb muscle weakness; Lower limb spasticity; Macular degeneration; Mental deterioration; Motor polyneuropathy; Nystagmus; Obesity; Peripheral axonal neuropathy; Pes cavus; Phenotypic variability; Progressive; Pseudobulbar behavioral symptoms; Respiratory insufficiency due to muscle weakness; Saccadic smooth pursuit; Seizures; Sensory neuropathy; Slow progression; Spastic gait; Spastic paraplegia; Spasticity; Specific learning disability; Thenar muscle atrophy; Tip-toe gait; Urinary bladder sphincter dysfunction; Urinary incontinence; Urinary urgency; Ventriculomegaly; Visual impairment
SUMF13p26.1100%gene with protein product607939Abnormality of peripheral nerve conduction; Abnormality of retinal pigmentation; Abnormality of the periventricular white matter; Anteverted nares; Ataxia; Autosomal recessive inheritance; Broad hallux; Broad hallux phalanx; Broad thumb; Cataract; Cerebellar atrophy; Cerebral atrophy; CNS demyelination; Coarse facial features; Coarse hair; Corneal opacity; Depressed nasal bridge; Developmental regression; Dysostosis multiplex; Flat face; Global developmental delay; Hearing impairment; Hepatomegaly; Hydrocephalus; Hypoplastic vertebral bodies; Ichthyosis; Increased CSF protein; Intellectual disability; Joint stiffness; Large forehead; Lower limb hyperreflexia; Macrocephaly; Mucopolysacchariduria; Neonatal hypotonia; Optic atrophy; Periorbital edema; Peripheral demyelination; Prominent forehead; Rapid neurologic deterioration; Retinal degeneration; Seizures; Sensorineural hearing impairment; Short stature; Smooth philtrum; Spasticity; Splenomegaly; Thick eyebrow; Ventriculomegaly; Visual impairment
TBCK4q2499.95%gene with protein product616899Abnormality of the periventricular white matter; Autosomal recessive inheritance; Brain atrophy; Bulbous nose; Cerebellar hypoplasia; Cerebellar vermis hypoplasia; Cerebral atrophy; Coarse facial features; Congenital onset; Dysplastic corpus callosum; Encephalopathy; Hypoplasia of the corpus callosum; Hyporeflexia; Narrow forehead; Poor speech; Prominent nasal bridge; Sloping forehead; Small basal ganglia; Tented upper lip vermilion; Thick vermilion border; Variable expressivity
TREX13p21.31100%gene with protein product606609AGS1Abnormality of extrapyramidal motor function; Abnormality of the periventricular white matter; Abnormality of the retinal vasculature; Acrocyanosis; Adult onset; Apraxia; Arrhinencephaly; Arthralgia; Autosomal dominant inheritance; Autosomal recessive inheritance; Basal ganglia calcification; Behavioral abnormality; Central nervous system degeneration; Cerebral atrophy; Chilblain lesions; Chronic CSF lymphocytosis; Deep white matter hypodensities; Dementia; Dysarthria; Dystonia; Elevated erythrocyte sedimentation rate; Elevated hepatic transaminases; Eyelid coloboma; Feeding difficulties in infancy; Fever; Focal white matter lesions; Global developmental delay; Hematuria; Hemiparesis; Hemiplegia/hemiparesis; Hepatosplenomegaly; Increased CSF interferon alpha; Intellectual disability, profound; Juvenile onset; Leukodystrophy; Leukoencephalopathy; Limb pain; Lower limb hyperreflexia; Macular edema; Mental deterioration; Migraine; Morphological abnormality of the pyramidal tract; Multiple gastric polyps; Muscular hypotonia of the trunk; Nystagmus; Petechiae; Poor head control; Porencephalic cyst; Progressive; Progressive encephalopathy; Progressive forgetfulness; Progressive microcephaly; Progressive visual loss; Prolonged neonatal jaundice; Proteinuria; Punctate vasculitis skin lesions; Raynaud phenomenon; Retinal exudate; Retinal hemorrhage; Retinopathy; Seizures; Skin ulcer; Spasticity; Strabismus; Stroke; Telangiectasia; Thrombocytopenia; Vasculitis in the skin; Visual impairmentAutoimmune Disorders
TSEN5417q25.1100%gene with protein product608755Abnormality of metabolism/homeostasis; Abnormality of the periventricular white matter; Autosomal recessive inheritance; Cerebellar hypoplasia; Congenital contracture; Congenital onset; Death in infancy; Extrapyramidal dyskinesia; Gliosis; Hypoplasia of the brainstem; Hypoplasia of the pons; Impaired smooth pursuit; Infantile encephalopathy; Loss of Purkinje cells in the cerebellar vermis; Microcephaly; Myoclonus; Olivopontocerebellar hypoplasia; Opisthotonus; Polyhydramnios; Poor suck; Progressive microcephaly; Restlessness; Seizures; Severe global developmental delay; Spasticity


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome