XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

ENTER GENES BELOW AND CLICK "ADD GENES TO SLICE"

If cutting and pasting from another document, please be sure to list EITHER one gene symbol per line OR enter a comma-separated list.


OR

SEARCH BY GENE SYMBOL OR PHENOTYPE (HPO TERM)

You may also use this search to review average exome sequencing coverage by entering the gene symbol below.

SELECTED GENES FOR YOUR SLICE

What do you want to do?

Place an e-order of this Slice on a specific patient through the GeneDx Portal  
Obtain a Slice ID to order testing with a printed requisition form  
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  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AbMinAbnormal Mineralization
CS-AlbinismAlbinism
CS-AlportAlport Syndrome
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CSSCoffin-Siris Syndrome
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-DKCDyskeratosis Congenita
CS-EDEctodermal Dysplasia
CS-EctrodactylyEctrodactyly
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-MODYMature Onset Diabetes of Young (MODY)
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPK/CIPalmoplantar keratoderma / congenital ichthyosis
CS-PKDPolycystic Kidney Disease
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-SkeletalSkeletal Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome

 
Abnormal Mineralization

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
ALPL1p36.12100%gene with protein product171760HOPSAbnormality of the dentition; Abnormality of the foot; Abnormality of the voice; Anemia; Anorexia; Apnea; Autosomal dominant inheritance; Autosomal recessive inheritance; Blue sclerae; Bowing of the legs; Carious teeth; Chondrocalcinosis; Constipation; Craniosynostosis; Death in infancy; Decreased calvarial ossification; Disproportionate short-limb short stature; Dolichocephaly; Elevated plasma pyrophosphate; Elevated urine pyrophosphate; Failure to thrive; Fever; Frontal bossing; Generalized hypotonia; Hypercalcemia; Hypercalciuria; Increased susceptibility to fractures; Intracranial hemorrhage; Irritability; Low alkaline phosphatase; Metaphyseal cupping; Micromelia; Myopathy; Nephrocalcinosis; Osteomalacia; Pathologic fracture; Phosphoethanolaminuria; Platyspondyly; Polyhydramnios; Premature loss of permanent teeth; Premature loss of primary teeth; Proptosis; Rachitic rosary; Recurrent fractures; Recurrent respiratory infections; Rickets; Seizures; Short lower limbs; Short ribs; Short stature; Skin dimple over apex of long bone angulation; Stillbirth; Unossified vertebral bodies; Vertebral clefting; Vomiting; Waddling gait; Widely patent fontanelles and suturesAbnormal Mineralization
ANKH5p15.2100%gene with protein product605145CCAL2, CMDJAbnormality of pelvic girdle bone morphology; Abnormality of the intervertebral disk; Abnormality of the metaphysis; Abnormality of the nasopharynx; Abnormality of the vertebral column; Adult onset; Arthralgia; Arthritis; Arthropathy; Autosomal dominant inheritance; Bony paranasal bossing; Calcification of cartilage; Calvarial osteosclerosis; Club-shaped distal femur; Craniofacial hyperostosis; Depressed nasal bridge; Erlenmeyer flask deformity of the femurs; Facial palsy; Hypertelorism; Joint swelling; Macrocephaly; Mandibular prognathia; Metaphyseal widening; Misalignment of teeth; Mixed hearing impairment; Nasal obstruction; Osteoarthritis; Osteopetrosis; Polyarticular chondrocalcinosis; Sclerosis of skull base; Skeletal dysplasia; Telecanthus; Wide nasal bridgeAbnormal Mineralization
AP2S119q13.32100%gene with protein product602242CLAPS2, HHC3Autosomal dominant inheritance; Bone pain; Chondrocalcinosis; Hypercalcemia; Hypermagnesemia; Hypocalciuria; Hypophosphatemia; Multiple lipomas; Osteomalacia; Pancreatitis; Parathormone-independent increased renal tubular calcium reabsorption; Primary hyperparathyroidismAbnormal Mineralization
CASR3q13.33-q21.100%gene with protein product601199HHC, HHC1Abdominal pain; Abnormal enzyme/coenzyme activity; Abnormal pattern of respiration; Abnormal renal physiology; Abnormality of calcium-phosphate metabolism; Abnormality of the fingernails; Abnormality of the metaphysis; Abnormality of the thyroid gland; Alopecia; Aminoaciduria; Anemia; Anxiety; Arrhythmia; Autosomal dominant inheritance; Autosomal recessive inheritance; Basal ganglia calcification; Calcinosis; Constipation; Cortical myoclonus; Depressivity; Dry skin; Dyspnea; Elevated C-reactive protein level; Elevated circulating parathyroid hormone level; EMG abnormality; Emotional lability; Failure to thrive; Fatigable weakness; Feeding difficulties in infancy; Generalized hypotonia; Hepatomegaly; Hypercalcemia; Hypercalciuria; Hypermagnesemia; Hypermagnesiuria; Hyperparathyroidism; Hyperphosphatemia; Hyperphosphaturia; Hypocalcemia; Hypocalciuria; Hypomagnesemia; Hypophosphatemia; Hypotension; Leukocytosis; Metaphyseal irregularity; Muscle cramps; Muscular hypotonia; Narrow chest; Nephrocalcinosis; Nephrolithiasis; Pancreatitis; Paresthesia; Polydipsia; Polyuria; Primary hyperparathyroidism; Recurrent fractures; Recurrent pancreatitis; Seizures; Short stature; Splenomegaly; Tachypnea; TetanyAbnormal Mineralization
CLCN5Xp11.23100%gene with protein product300008NPHL2, NPHL1Aminoaciduria; Bone pain; Bowing of the legs; Bulging epiphyses; Chronic kidney disease; Delayed epiphyseal ossification; Enlargement of the ankles; Enlargement of the wrists; Femoral bowing; Fibular bowing; Focal segmental glomerulosclerosis; Glomerulosclerosis; Glycosuria; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Low-molecular-weight proteinuria; Metaphyseal irregularity; Microscopic hematuria; Nephrocalcinosis; Nephrolithiasis; Osteomalacia; Phenotypic variability; Proximal tubulopathy; Recurrent fractures; Renal insufficiency; Renal phosphate wasting; Rickets; Short stature; Slow progression; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Tubular atrophy; Tubulointerstitial fibrosis; X-linked recessive inheritanceAbnormal Mineralization
CYP27B112q14.1100%gene with protein product609506VDD1, PDDRAbdominal wall muscle weakness; Autosomal recessive inheritance; Bone pain; Bowing of the legs; Bulging epiphyses; Bulging of the costochondral junction; Deformed rib cage; Delayed epiphyseal ossification; Delayed eruption of teeth; Difficulty standing; Difficulty walking; Elevated alkaline phosphatase; Elevated circulating parathyroid hormone level; Enlargement of the ankles; Enlargement of the costochondral junction; Enlargement of the wrists; Failure to thrive; Femoral bowing; Fibular bowing; Flat occiput; Frontal bossing; Generalized aminoaciduria; Generalized hypotonia; Growth delay; Hypocalcemic seizures; Hypophosphatemia; Hypoplasia of dental enamel; Irritability; Metaphyseal irregularity; Motor delay; Protuberant abdomen; Recurrent fractures; Rickets; Secondary hyperparathyroidism; Sparse bone trabeculae; Subperiosteal bone resorption; Thin bony cortex; Tibial bowing; Widely patent fontanelles and suturesAbnormal Mineralization
CYP2R111p15.2100%gene with protein product608713Autosomal recessive inheritance; Bone pain; Bowing of the legs; Bulging epiphyses; Bulging of the costochondral junction; Deformed rib cage; Delayed epiphyseal ossification; Difficulty standing; Difficulty walking; Elevated alkaline phosphatase; Enlargement of the ankles; Enlargement of the costochondral junction; Enlargement of the wrists; Failure to thrive; Femoral bowing; Fibular bowing; Flat occiput; Frontal bossing; Generalized hypotonia; Growth delay; Hypophosphatemia; Infantile onset; Metaphyseal irregularity; Muscle weakness; Recurrent fractures; Rickets; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Widely patent fontanelles and suturesAbnormal Mineralization
DMP14q22.199.83%gene with protein product600980Abnormal trabecular bone morphology; Abnormality of renal excretion; Abnormality of the sacroiliac joint; Autosomal recessive inheritance; Bone pain; Coxa vara; Craniosynostosis; Delayed eruption of teeth; Distal femoral bowing; Elevated alkaline phosphatase of bone origin; Enlargement of the wrists; Enthesitis; Genu varum; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased bone mineral density; Low serum calcitriol; Lower limb asymmetry; Malabsorption; Osteomalacia; Polyarticular arthritis; Pseudo-fractures; Renal hypophosphatemia; Renal phosphate wasting; Rickets; Rickets of the lower limbs; Sclerotic vertebral endplates; Sensorineural hearing impairment; Short stature; Skeletal dysplasia; Spinal canal stenosis; Tibial bowing; Tooth abscessAbnormal Mineralization
ENPP16q23.299.79%gene with protein product173335NPPS, M6S1, PDNP1Abnormal trabecular bone morphology; Abnormality of renal excretion; Abnormality of the cerebral vasculature; Abnormality of the sacroiliac joint; Angioid streaks of the fundus; Arterial stenosis; Autosomal dominant inheritance; Autosomal recessive inheritance; Bone pain; Bruising susceptibility; Congestive heart failure; Coronary artery calcification; Coxa vara; Craniosynostosis; Delayed eruption of teeth; Distal femoral bowing; Elevated alkaline phosphatase of bone origin; Enlargement of the wrists; Enthesitis; Epidermal acanthosis; Excessive wrinkled skin; Generalized arterial calcification; Genu varum; Hypergranulosis; Hyperkeratosis; Hyperphosphaturia; Hypertension; Hypophosphatemic rickets; Increased bone mineral density; Low serum calcitriol; Lower limb asymmetry; Malabsorption; Myocardial infarction; Myopia; Osteomalacia; Polyarticular arthritis; Pseudo-fractures; Renal hypophosphatemia; Renal phosphate wasting; Retinal hemorrhage; Retinopathy; Rickets of the lower limbs; Sclerotic vertebral endplates; Sensorineural hearing impairment; Short stature; Skeletal dysplasia; Skin rash; Spinal canal stenosis; Striae distensae; Thickened nuchal skin fold; Tibial bowing; Tooth abscessAbnormal Mineralization ; Palmoplantar keratoderma / congenital ichthyosis
FAH15q25.1100%gene with protein product613871Abnormal bleeding; Abnormality of coagulation; Abnormality of the abdominal wall; Acute hepatic failure; Ascites; Autosomal recessive inheritance; Cirrhosis; Elevated alpha-fetoprotein; Elevated hepatic transaminases; Elevated urinary delta-aminolevulinic acid; Enlarged kidney; Episodic peripheral neuropathy; Failure to thrive; Gastrointestinal hemorrhage; Generalized aminoaciduria; Glomerulosclerosis; Hepatocellular carcinoma; Hepatomegaly; Hypermethioninemia; Hypertrophic cardiomyopathy; Hypertyrosinemia; Hypoglycemia; Hypophosphatemic rickets; Nephrocalcinosis; Pancreatic islet-cell hyperplasia; Paralytic ileus; Periodic paralysis; Renal Fanconi syndrome; Renal insufficiency; SplenomegalyAbnormal Mineralization
FAM20C7p22.3100%gene with protein product611061Anteverted nares; Autosomal recessive inheritance; Brachyturricephaly; Cerebral calcification; Choanal atresia; Choanal stenosis; Cleft palate; Delayed cranial suture closure; Depressed nasal bridge; Depressed nasal ridge; Downslanted palpebral fissures; Elevated alkaline phosphatase; Gingival fibromatosis; Gingival overgrowth; Global developmental delay; High palate; Hypertelorism; Hypophosphatemia; Increased bone mineral density; Intrauterine growth retardation; Large fontanelles; Low-set ears; Malar flattening; Mandibular aplasia; Median cleft lip and palate; Microcephaly; Micrognathia; Midface retrusion; Narrow mouth; Neonatal death; Posteriorly rotated ears; Proptosis; Protruding tongue; Pulmonary hypoplasia; Respiratory distress; Respiratory failure; Retrognathia; Short neck; Short nose; Short stature; Thoracic hypoplasiaAbnormal Mineralization
FGF2312p13.32100%gene with protein product605380Abnormality of the dentition; Abnormality of the lower limb; Autosomal dominant inheritance; Bone pain; Elevated alkaline phosphatase; Fatigue; Generalized muscle weakness; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Incomplete penetrance; Muscle weakness; Osteomalacia; Recurrent fractures; Renal phosphate wasting; Short statureAbnormal Mineralization
GNA1119p13.399.98%gene with protein product139313HHC2Abdominal pain; Abnormal pattern of respiration; Abnormality of the fingernails; Alopecia; Anxiety; Arrhythmia; Choroidal melanoma; Ciliary body melanoma; Cortical myoclonus; Depressivity; Dry skin; EMG abnormality; Emotional lability; Fatigable weakness; Hypercalciuria; Hypermagnesiuria; Hyperphosphatemia; Hypocalcemia; Hypomagnesemia; Hypotension; Iris melanoma; Nephrocalcinosis; Paresthesia; Retinal detachment; Visual lossAbnormal Mineralization
OCRLXq26.199.83%gene with protein product300535Abnormal pupil morphology; Abnormality of calcium-phosphate metabolism; Abnormality of the renal tubule; Abnormality of the voice; Aggressive behavior; Amblyopia; Aminoaciduria; Anxiety; Areflexia; Arthritis; Attention deficit hyperactivity disorder; Benign neoplasm of the central nervous system; Bicarbonaturia; Buphthalmos; Camptodactyly of finger; Cataract; Childhood onset; Chronic kidney disease; Clonus; Cognitive impairment; Congenital cataract; Constipation; Cryptorchidism; Deeply set eye; Dehydration; Dense posterior cortical cataract; Depressivity; Dysphasia; EEG abnormality; Elevated amniotic fluid alpha-fetoprotein; Elevated maternal serum alpha-fetoprotein; Elevated serum acid phosphatase; Elevated serum creatine phosphokinase; Failure to thrive; Feeding difficulties in infancy; Fine hair; Finger swelling; Frontal bossing; Full cheeks; Generalized hypopigmentation; Genu valgum; Glaucoma; Global developmental delay; Glomerulopathy; Hip dislocation; Hypercalciuria; Hypercholesterolemia; Hyperparathyroidism; Hyperphosphaturia; Hypokalemia; Hyponatremia; Hypoplasia of dental enamel; Intellectual disability; Joint hyperflexibility; Joint hypermobility; Joint swelling; Kyphosis; Long face; Low-molecular-weight proteinuria; Low-set, posteriorly rotated ears; Microphthalmia; Neonatal hypotonia; Neoplasm of the skin; Nystagmus; Obsessive-compulsive behavior; Osteomalacia; Pathologic fracture; Periventricular cysts; Platyspondyly; Proteinuria; Protruding ear; Proximal renal tubular acidosis; Proximal tubulopathy; Recurrent fractures; Reduced visual acuity; Renal Fanconi syndrome; Renal insufficiency; Rickets; Scoliosis; Seizures; Self-injurious behavior; Short stature; Sparse scalp hair; Stereotypy; Subcutaneous nodule; Thrombocytopenia; Ventriculomegaly; Visual impairment; Vitamin D deficiency; Wrist swelling; X-linked recessive inheritanceAbnormal Mineralization
PHEXXp22.1199.84%gene with protein product300550HYP, HPDRAbnormality of dental enamel; Abnormality of pelvic girdle bone morphology; Abnormality of the metaphysis; Arthralgia; Bone pain; Bowing of the legs; Craniosynostosis; Elevated alkaline phosphatase; Elevated circulating parathyroid hormone level; Enthesitis; Femoral bowing; Fibular bowing; Flattening of the talar dome; Frontal bossing; Genu varum; Hypomineralization of enamel; Hypophosphatemia; Hypophosphatemic rickets; Joint dislocation; Metaphyseal irregularity; Osteoarthritis; Osteomalacia; Phenotypic variability; Rachitic rosary; Renal phosphate wasting; Renal tubular dysfunction; Rickets; Short stature; Shortening of the talar neck; Spinal canal stenosis; Spinal cord compression; Tibial bowing; Tooth abscess; Trapezoidal distal femoral condyles; X-linked dominant inheritanceAbnormal Mineralization
SLC34A15q35.399.99%gene with protein product182309NPT2, SLC17A2Autosomal dominant inheritance; Autosomal recessive inheritance; Elevated alkaline phosphatase of bone origin; Generalized aminoaciduria; Glycosuria; Hypercalcemia; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Increased susceptibility to fractures; Medullary nephrocalcinosis; Muscle weakness; Nephrolithiasis; Osteopenia; Osteoporosis; Proximal tubulopathy; Renal insufficiency; Renal phosphate wasting; Rickets; Short statureAbnormal Mineralization
SLC34A39q34.399.97%gene with protein product609826Abnormality of abdomen morphology; Autosomal recessive inheritance; Bone pain; Bowing of the legs; Bulging epiphyses; Bulging of the costochondral junction; Calcium nephrolithiasis; Deformed rib cage; Delayed epiphyseal ossification; Difficulty standing; Difficulty walking; Elevated alkaline phosphatase; Enlargement of the ankles; Enlargement of the costochondral junction; Enlargement of the wrists; Failure to thrive; Femoral bowing; Fibular bowing; Flat occiput; Frontal bossing; Generalized hypotonia; Growth delay; Hypercalciuria; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Infantile onset; Metaphyseal irregularity; Muscle weakness; Osteomalacia; Recurrent fractures; Renal phosphate wasting; Renal tubular dysfunction; Rickets; Short stature; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Widely patent fontanelles and suturesAbnormal Mineralization
SLC9A3R117q25.1100%gene with protein product604990Autosomal dominant inheritance; Hyperphosphaturia; Hypophosphatemia; Increased susceptibility to fractures; Nephrolithiasis; Osteopenia; Osteoporosis; Renal phosphate wastingAbnormal Mineralization
VDR12q13.11100%gene with protein product601769Abdominal wall muscle weakness; Abnormal adipose tissue morphology; Abnormal form of the vertebral bodies; Abnormality of the hip bone; Abnormality of the metaphysis; Abnormality of the skin; Abnormality of the thorax; Alopecia; Alopecia universalis; Autosomal dominant inheritance; Autosomal recessive inheritance; Bone cyst; Bone pain; Bowing of the legs; Bulging epiphyses; Bulging of the costochondral junction; Carious teeth; Deformed rib cage; Delayed epiphyseal ossification; Delayed eruption of teeth; Difficulty standing; Difficulty walking; Dolichocephaly; Elevated alkaline phosphatase; Elevated circulating parathyroid hormone level; Enlargement of the ankles; Enlargement of the wrists; Failure to thrive; Femoral bowing; Fibular bowing; Flat occiput; Frontal bossing; Gait disturbance; Generalized hypotonia; Genu varum; Growth delay; Hyperparathyroidism; Hypocalcemia; Hypocalcemic seizures; Hypophosphatemia; Hypoplasia of dental enamel; Increased serum 1,25-dihydroxyvitamin D3; Infantile onset; Irritability; Joint dislocation; Metaphyseal irregularity; Motor delay; Nephrolithiasis; Osteolysis; Osteomalacia; Osteoporosis; Premature loss of primary teeth; Protuberant abdomen; Recurrent fractures; Rickets; Rough bone trabeculation; Secondary hyperparathyroidism; Short stature; Sparse bone trabeculae; Subperiosteal bone resorption; Thin bony cortex; Tibial bowing; Widely patent fontanelles and suturesAbnormal Mineralization

The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.